View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_29 (Length: 382)
Name: NF1364_high_29
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 30 - 372
Target Start/End: Complemental strand, 44583230 - 44582888
Alignment:
| Q |
30 |
aaatccaagaagaaaagaagaccctacttgaacatagcatcgaatcatcttcatgattacatttccatagcaagaagccaagaatatggagagaccattc |
129 |
Q |
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| T |
44583230 |
aaatccaagaagaaaagaagaccctacttgaacatagcatctaatcatcttcatgattacatttccatagcaagaagccaagaatatggagagaccattc |
44583131 |
T |
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| Q |
130 |
caaatacaaaaaaccattgccatctccacgttgtccnnnnnnnnnnnnnnnnnnggacaaggagaaaatctatttacaaatggttgttacacatttggta |
229 |
Q |
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| T |
44583130 |
caaatacaaaaaaccattgccatctccacgttgtcctttttttggttttgttttggacaaggagaaaatctatttacaaatggttgttacacatttggta |
44583031 |
T |
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| Q |
230 |
caaaacttttctacaaaaccaagccacgaaacagggggaaggaacacattagccattatcagtgatctgaatgggactcgtaaaattcacttggacaagg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44583030 |
caaaacttttctacaaaaccaagccacgaaacagggggaaggaacacattagccattatcagtgatctgaatgggactcgtaaaattcacttggacaagg |
44582931 |
T |
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| Q |
330 |
cgacatgacctcttgctccagcaactgcaatacttgattcatc |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44582930 |
cgacatgacctcttgctccagcaactgcaatacttgattcatc |
44582888 |
T |
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