View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1364_high_3 (Length: 749)
Name: NF1364_high_3
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 98 - 741
Target Start/End: Complemental strand, 56539759 - 56539132
Alignment:
| Q |
98 |
gttcttggtagaaatttatagaacatagttctctttggatctaccttgctaccaaagtaccaattttccacgtagtcatacataagaagaaaaaatgtta |
197 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
56539759 |
gttcttggtagaaatttatagaacatagttctctttggatctaccttgctaccaa--------ttttccacgtagtcatacataagaagaaaaaatgtta |
56539668 |
T |
|
| Q |
198 |
cgcagattagtttctttctttctttctttcaatgtgttcaggnnnnnnnnnnnnnnnnnnnnnngtatgcaatatcaaatctaatacacataataagaaa |
297 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
56539667 |
cacagattagtttctttctttctttctttcaatgtgttcaggttattattattattat------gtatgcaatgtcaaatctaatacacataataagaaa |
56539574 |
T |
|
| Q |
298 |
atacatctataaatataatcagtagaatcgaaaacgaaaatctaaaattagaaaatatgattaattttatcaccaatgtatgcaatcacatgcttatttg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
56539573 |
atacatctataaatataatcagtagaatcgaaaacgaaaatctaaaattagaaaatatgattaattttatcacgaatgtatggaatcacatgcttatttg |
56539474 |
T |
|
| Q |
398 |
ttgaaggtaatctcactaaagctgttgctgcatgtactttgattatcagatattatcagaagttgcttccctgctttactatttacacctttggataaca |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56539473 |
ttgaaggtaatctcactaaagctgttgctgcatgtactttgattatcagatattattagaagttgcttccctgctttactatttacacctttggataaca |
56539374 |
T |
|
| Q |
498 |
tctttctttgttcacagtgtctctccttgtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaatt |
597 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
56539373 |
tctttctttgttcacagtgtctctccttgtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcc--tttgaccctttgaacagaaaaatt |
56539276 |
T |
|
| Q |
598 |
gagcacaacattattacctctcaatgaaaatgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttcct |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56539275 |
gagcacaacattattacctctcaatgaaaatgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttcct |
56539176 |
T |
|
| Q |
698 |
tttcttgttgtgttccttttcttgttgtatctctgatctctgct |
741 |
Q |
| |
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||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
56539175 |
tttcttgttgtgttctttttcttgttgtgtctctgatctctgct |
56539132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 9e-63; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 464 - 710
Target Start/End: Original strand, 30689553 - 30689811
Alignment:
| Q |
464 |
ttccctgctttactatttacacctttggataacatctttctttgttcacagtgtctctcctt--------------gtgaaaactcttctctgcaatcat |
549 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||||||||||||||||||| |||| ||||| || ||||| || ||||||||||||||| |
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| T |
30689553 |
ttccctgctttattctttacaccttttgataacatctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcat |
30689652 |
T |
|
| Q |
550 |
attgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgatcgtaagctaaa |
649 |
Q |
| |
|
||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||| ||||||||| |
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| T |
30689653 |
attgaatctcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaa |
30689750 |
T |
|
| Q |
650 |
gcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgtgt |
710 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
30689751 |
gcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtgt |
30689811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 526 - 687
Target Start/End: Original strand, 30671734 - 30671893
Alignment:
| Q |
526 |
gtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaa |
625 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
30671734 |
gtgaagacccttctctgcaatcatattgaatctcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacggcattattacctctcattgaa |
30671831 |
T |
|
| Q |
626 |
aatgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaac |
687 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30671832 |
aatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaac |
30671893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 526 - 708
Target Start/End: Original strand, 30718672 - 30718852
Alignment:
| Q |
526 |
gtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaa |
625 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||||||| ||| || |||||||| |||| |
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|
| T |
30718672 |
gtgaagacccttctctgcaatcatattgaatcgcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacagcatcataacctctcattgaa |
30718769 |
T |
|
| Q |
626 |
aatgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt |
708 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||||||| |
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| T |
30718770 |
aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgt |
30718852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 539 - 708
Target Start/End: Original strand, 30698528 - 30698695
Alignment:
| Q |
539 |
tctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgat |
638 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| |
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|
| T |
30698528 |
tctgcaatcatattgaatctcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacagcattattacctctcattgagaatgcagcttgat |
30698625 |
T |
|
| Q |
639 |
cgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt |
708 |
Q |
| |
|
| ||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||||| |
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|
| T |
30698626 |
cataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgt |
30698695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 539 - 687
Target Start/End: Original strand, 30656586 - 30656732
Alignment:
| Q |
539 |
tctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgat |
638 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
30656586 |
tctgcaatcatattgaatctcttgcaaagattcttt--gaccctttgaacagaaaaattgagcacagcattattacctctcattgaaaatgcagcttgat |
30656683 |
T |
|
| Q |
639 |
cgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaac |
687 |
Q |
| |
|
| ||||||||||||||||| |||||||| ||||||||||| | |||||| |
|
|
| T |
30656684 |
cataagctaaagcagcatcttcagcactatcaaatgttcctaaccaaac |
30656732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 526 - 708
Target Start/End: Original strand, 30710398 - 30710578
Alignment:
| Q |
526 |
gtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaa |
625 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||| || |||| ||| |||| | |||||||||||| | | ||||||||||||||| |||| |
|
|
| T |
30710398 |
gtgaagacccttttctgcaatcatattgaatctcttgcaaagattcttt--gacgctttcgaaagaaaaattgaggaaagcattattacctctcattgaa |
30710495 |
T |
|
| Q |
626 |
aatgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt |
708 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
30710496 |
aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttcttcctcctcttgttgt |
30710578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 98 - 223
Target Start/End: Original strand, 32791597 - 32791719
Alignment:
| Q |
98 |
gttcttggtagaaatttatagaacatagttctctttggatctaccttgctaccaaagtaccaattttccacgtag-----tcatacataagaagaaaaaa |
192 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
32791597 |
gttcttggtagaaatttatagaacacagttctctttggctctaccttgctaccaa--------ttttccacgtagagatgtcatacataagaagaaaaaa |
32791688 |
T |
|
| Q |
193 |
tgttacgcagattagtttctttctttctttc |
223 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
32791689 |
tgttacacagattagtttctttctttctttc |
32791719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 526
Target Start/End: Original strand, 30671680 - 30671720
Alignment:
| Q |
486 |
ctttggataacatctttctttgttcacagtgtctctccttg |
526 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30671680 |
cttttgataacatttttctttgttcacagtgtctctccttg |
30671720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 368
Target Start/End: Original strand, 32791761 - 32791819
Alignment:
| Q |
309 |
aatataatcagtagaatcgaaaacgaaaatctaaaattagaaaatatgattaattttatc |
368 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| |||||||||||||||| |||||||||||| |
|
|
| T |
32791761 |
aatataatcagaagaatggaaaagaaaaat-taaaattagaaaatataattaattttatc |
32791819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 30698327 - 30698373
Alignment:
| Q |
418 |
gctgttgctgcatgtactttgattatcagatattatcagaagttgct |
464 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| | |||||||||| |
|
|
| T |
30698327 |
gctgttgctgcttgaactttgattatcagatattgttagaagttgct |
30698373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Original strand, 30689443 - 30689476
Alignment:
| Q |
417 |
agctgttgctgcatgtactttgattatcagatat |
450 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
30689443 |
agctgttgctgcttgtactttgattatcagatat |
30689476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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