View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_33 (Length: 364)
Name: NF1364_high_33
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 100 - 349
Target Start/End: Complemental strand, 14813611 - 14813362
Alignment:
| Q |
100 |
taattgtatgtaatgtttgatagtagatgctgcaattggaacagaattgaggaagaaaagtggttaactgtcacagtatcacagcgttacgtacgtacta |
199 |
Q |
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| T |
14813611 |
taattgtatgtaatgtttgatagtagatgctgcaattggaacagaattgaggaagaaaagtggttaactgtcacagtatcacagcgttacgtacgtacta |
14813512 |
T |
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| Q |
200 |
ctgtgtttaattttgaatggcatatctcgtgtcccaagtgggccaagaagaagatatagttaagattttttatatttgaattctataggaattgactaat |
299 |
Q |
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| T |
14813511 |
ctgtgtttaattttgaatggcatatctcgtgtcccaagtgggccaagaagaagatatagttaagattttttatatttgaattctagaggaattgactaat |
14813412 |
T |
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| Q |
300 |
tcagcgccaactctgaaacacattatcacttgttttgatcaaccagtcat |
349 |
Q |
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| T |
14813411 |
tcagcgccaactctgaaacacattatcacatgttttgatcaaccagtcat |
14813362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 14813648 - 14813594
Alignment:
| Q |
29 |
aataatcatatactgtattaatcaatgtttatcacaataattgtatgtaatgttt |
83 |
Q |
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| T |
14813648 |
aataatcatatactgtattaatcaatgtttatcacaataattgtatgtaatgttt |
14813594 |
T |
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