View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_35 (Length: 311)
Name: NF1364_high_35
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 36912950 - 36912649
Alignment:
| Q |
1 |
ccatttatatcatgttttaataaagtattcgaaggtaaatttttagcatggcctccacaacttctcttttttcttcttcttgtaaaccttcatattcttc |
100 |
Q |
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||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36912950 |
ccatttatatcatgttttaataaagtattggaatgtaattttttagcatggcctccacaacttctcttttttcttcttcttgtaaaccttcatattcttc |
36912851 |
T |
|
| Q |
101 |
caccgcaactagctcaaaatccagtccaaaatcattttcatcttcttcctctgcaagagaatcttcatagtcttcatcttcttcctcaacaactctttca |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36912850 |
caccacaactagctcaaaatccagtccaaaatcattttcatcttcttcctctgcaagagaatcttcatagtcttcatcttcttcctcaacaactctttca |
36912751 |
T |
|
| Q |
201 |
aaatccatagaatcttctactatttcacgttcattgtctccatcttcatcttcttcctcaatcaaagaatcttctactctttcacactcatagtcttcat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36912750 |
aaatccatagaatcttctactatttcacgttcattgtctccatcttcatcttcttcctcaatcaaagaatcttctactctttcacactcatagtcttcat |
36912651 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
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|
| T |
36912650 |
ct |
36912649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 36912663 - 36912532
Alignment:
| Q |
165 |
tcatagtcttcatcttcttcctcaacaactctttcaaaatccatagaatcttctactatttcacgttcattgtctccatcttcatcttcttcctcaatca |
264 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
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| T |
36912663 |
tcatagtcttcatcttcttccactgcaactctttcaaaatccatagaatcttctactatttcacgttcattg------tcttcatttgcttcctcaatca |
36912570 |
T |
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| Q |
265 |
aagaatcttctactctttcacactcatagtcttcatct |
302 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
36912569 |
aagaatcttctactctttcacattcatagtcttcatct |
36912532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 11166247 - 11165952
Alignment:
| Q |
1 |
ccatttatatcatgttttaataaagtattcgaaggtaaatttttagcatggcctccacaacttctcttttttcttcttcttgtaaaccttcatattcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11166247 |
ccatttatatcatgttttaataaagtattggaatgtaattttttagcatggcctccacaacttctcttttttcttcttcttgtaaaccttcatattcttc |
11166148 |
T |
|
| Q |
101 |
caccgcaactagctcaaaatccagtccaaaatcattttcatcttcttcctctgcaagagaatcttcatagtcttcatcttcttcctcaacaactctttca |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
11166147 |
caccacaactagctcaaaatccagtccaaaatcattttcatcttcttcctctgtaagagaatcttcatagtcttcatcttcttccactacaactctttca |
11166048 |
T |
|
| Q |
201 |
aaatccatagaatcttctactatttcacgttcattgtctccatcttcatcttcttcctcaatcaaagaatcttctactctttcacactcatagtcttcat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11166047 |
aaatccatagaatcttctactatttcacgttcattg------tcttcatttgcttcctcaatcaaagaatcttctactctttcacattcatagtcttcat |
11165954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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