View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_37 (Length: 306)
Name: NF1364_high_37
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 106 - 295
Target Start/End: Complemental strand, 39072029 - 39071840
Alignment:
| Q |
106 |
tgaaagtgtatgtttcatccgttaagaatttcatgtcggtcgtggatctcatgaagttgtttttggtttacgtattacataattggctgtattggaagcc |
205 |
Q |
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| T |
39072029 |
tgaaagtgtatgtttcatccgttaagaatttcatgtcggtcgtggatctcatgaagttgtttttggtttacgtattacataattggctgtattggaagcc |
39071930 |
T |
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| Q |
206 |
taatatatgacaccattaatccattatgatatgcttcaatattaactgcatctgtttaatattactatgtgcatatcagagcaggttcat |
295 |
Q |
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| T |
39071929 |
taatatatgacaccattaatccattatgatatgcttcaatattaactgcatctgtttaatattactatgtgcatatcagagcaggttcat |
39071840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 39072080 - 39072048
Alignment:
| Q |
75 |
ctatctgtttcatggctttgaaaatgtaatgtg |
107 |
Q |
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| T |
39072080 |
ctatctgtttcatggctttgaaaatgtaatgtg |
39072048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 4455648 - 4455833
Alignment:
| Q |
109 |
aagtgtatgtttcatccgttaagaatttcatgtcggtcgtggatctcatgaagttgt-ttttggtttacgtatt-acataattggctgtattggaagcct |
206 |
Q |
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| T |
4455648 |
aagtgtatgtttcatgtgttaagaatttcatgtctgtcctggatctcaggttgttgtcttttggtaaacatatttacccaattagctgtattggaagcct |
4455747 |
T |
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| Q |
207 |
aatatatgacaccattaatccattatgatatgcttcaatattaactgcatctgtttaatattactatgtgcatatcagagcaggtt |
292 |
Q |
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| T |
4455748 |
actttatgacactatttatgcattatgatatgcttcaatattaaatgcatgtgtttactattacaatgtacatatcagagcaggtt |
4455833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 289
Target Start/End: Complemental strand, 44656908 - 44656726
Alignment:
| Q |
109 |
aagtgtatgtttcatccgttaagaatttcatgtcggtcgtggatctcatgaagttgt-ttttggtttacgtatt-acataattggctgtattggaagcct |
206 |
Q |
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| T |
44656908 |
aagtgtatgtttcatgtgttaagaatttcatgtctgtcctggatctcaggttgctgtcttttggtaaacatatttacgcaattagctgtattggaagcct |
44656809 |
T |
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| Q |
207 |
aatatatgacaccattaatccattatgatatgcttcaatattaactgcatctgtttaatattactatgtgcatatcagagcag |
289 |
Q |
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| T |
44656808 |
actttatgacactatttatgtattatgatatgcttcaatattaagtgcatgtgtttactattacaatgtgcatatcagagcag |
44656726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 31446645 - 31446828
Alignment:
| Q |
109 |
aagtgtatgtttcatccgttaagaatttcatgtcggtcgtggatctcatgaa-gttgt-ttttggtttacgtatt-acataattggctgtattggaagcc |
205 |
Q |
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||||||||||||||| |||||| |||||||||| ||| ||||||||| | ||||| ||||||| || |||| || |||| ||||||||||||||| |
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| T |
31446645 |
aagtgtatgtttcatgtgttaagtatttcatgtctgtcctggatctcaggtttgttgtcttttggtaaacatatttacccaattagctgtattggaagcc |
31446744 |
T |
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| Q |
206 |
taatatatgacaccattaatccattatgatatgcttcaatattaactgcatctgtttaatattactatgtgcatatcagagcag |
289 |
Q |
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| T |
31446745 |
tactttatgacactatttatgtattatgatatgcttcaatattaagtgcatgtgtttactattacaatgtgcatatcagagcag |
31446828 |
T |
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