View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1364_high_42 (Length: 282)
Name: NF1364_high_42
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 23175513 - 23175273
Alignment:
| Q |
30 |
ttgatcaacctcaacaattgtttcttgtcaccatgaaacccttaaatccaccaatttattgattttgcacaattccttgatcttgagcaatcaaaccctt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23175513 |
ttgatcaacctcaacaattgtttcttgtcaccatgaaacccttaaatccaccaatttattgattttgcacaattccttgatcttgagcaatcaaaccctt |
23175414 |
T |
|
| Q |
130 |
gattctgaactatctttgtcaatcactagcaacctcgcttgaatctcaagaacaaaaatccccaaaaccatttggaggtgaatttttccttttaagttcc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23175413 |
gattctgaactatctttgtcaatcactagcaacctcgcttgaatctcaagaacaaaaatccccaaaaccatttggaggtgaatttttccttttaagttcc |
23175314 |
T |
|
| Q |
230 |
aaatttccccaaattgaagaatgattccacctaatcatatt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
23175313 |
aaatttccccaaattgaagaatgattccacttaatcctatt |
23175273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 26876727 - 26876784
Alignment:
| Q |
98 |
acaattccttgatcttgagcaatcaaacccttgattctgaactatctttgtcaatcac |
155 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
26876727 |
acaattccttgatcttgatcaatcaaacccttgattctcaacgatcattgtcaatcac |
26876784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 18597418 - 18597491
Alignment:
| Q |
141 |
atctttgtcaatcactagcaacctcgcttgaatctcaagaacaaaaat--ccccaaaa-ccatttggaggtgaa |
211 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||| |||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
18597418 |
atctttatcaatcactagcaaccttgcgtgaatgtcaagaacaaaaataaccccaaaacccttttggaggtgaa |
18597491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University