View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1364_high_49 (Length: 263)
Name: NF1364_high_49
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_49 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 13268933 - 13269116
Alignment:
| Q |
58 |
aaaaacttctctatacctgaatcaacagtcatggcgttctcgtcaatctttttcacttcactaggatcaacttgctcctcatcgacaccaatcggcatgt |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
13268933 |
aaaaacttctctatacctgaatcaacagtcatgatgttctcgtcaatctttttcacttcactaggatcaacttgctcctcatcgacaccaattgacatgc |
13269032 |
T |
|
| Q |
158 |
tttcctccccatcacaaaaatcaatatctctcagtgtcactgaattatttagcagcctggtagatgaaccactcattttctctg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
13269033 |
tttcctccccatcacaaaaatcaatatctctcggagtcactggattatttagcagccttgtagatgaaccattcattttctctg |
13269116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 93 - 241
Target Start/End: Original strand, 13269455 - 13269603
Alignment:
| Q |
93 |
gttctcgtcaatctttttcacttcactaggatcaacttgctcctcatcgacaccaatcggcatgttttcctccccatcacaaaaatcaatatctctcagt |
192 |
Q |
| |
|
|||||| ||| | |||||||||| ||| ||||||||| |||||||| |||||||||| |||||||||||||||||||| |||| |||||||| | || |
|
|
| T |
13269455 |
gttctcatcagtatttttcacttgactgtgatcaacttcctcctcattgacaccaatctgcatgttttcctccccatcagaaaatccaatatctattggt |
13269554 |
T |
|
| Q |
193 |
gtcactgaattatttagcagcctggtagatgaaccactcattttctctg |
241 |
Q |
| |
|
||||||||| | ||| |||| ||| |||||||||| ||| |||||||| |
|
|
| T |
13269555 |
gtcactgaaatgttttgcagattggcagatgaaccaatcactttctctg |
13269603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 13260210 - 13260329
Alignment:
| Q |
122 |
gatcaacttgctcctcatcgacaccaatcggcatgttttcctccccatcacaaaaatcaatatctctcagtgtcactgaattatttagcagcctggtaga |
221 |
Q |
| |
|
||||| ||||||||| || || |||||| | | |||||||||| ||||||||| |||||||||| ||||| ||||||| |||| || ||||||| |
|
|
| T |
13260210 |
gatcatcttgctcctgattaacgccaatctgtaagttttcctccacatcacaaatggcaatatctcttggtgtcggtgaattacttagaagtttggtaga |
13260309 |
T |
|
| Q |
222 |
tgaaccactcattttctctg |
241 |
Q |
| |
|
||||||| ||| |||||||| |
|
|
| T |
13260310 |
tgaaccaatcaatttctctg |
13260329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 13261516 - 13261552
Alignment:
| Q |
47 |
agtaaaattcgaaaaacttctctatacctgaatcaac |
83 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
13261516 |
agtataattcgaaaaacttttctatacctgaatcaac |
13261552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University