View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_50 (Length: 257)
Name: NF1364_high_50
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_50 |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 257
Target Start/End: Original strand, 15855054 - 15855282
Alignment:
| Q |
29 |
agtctccgtatttgggatcaagagttcatcaaagttgatcaccgtacattatttgctatagtcttggttagttattttagcttctctcatacttatttct |
128 |
Q |
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| T |
15855054 |
agtctccgtatttgggatcaagagttcatcaaagttgatcaccgtacattgtttgctatagtcttggttagttattttagcttctctcatacttatttct |
15855153 |
T |
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| Q |
129 |
ttacatgtaacagcatgatgatatagtttaagtattttagagttaaaattttacacctaacattatgatgatgatatagtttaagtattttggagttaaa |
228 |
Q |
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| T |
15855154 |
ttacatgtaacagcatgatgatatagtttaagtattttagagttaaaattttacacctaacattatgatgatgatatagtttaagtattttggagttaaa |
15855253 |
T |
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| Q |
229 |
atttagattctgtttgcaatgtgaaattt |
257 |
Q |
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| T |
15855254 |
atttagattctgtttgcaatgtgaaattt |
15855282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 50947327 - 50947380
Alignment:
| Q |
205 |
tagtttaagtattttggagttaaaattt-agattctgtttgcaatgtgaaattt |
257 |
Q |
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| T |
50947327 |
tagtttaattaatttggagttaaaatttgagattctgtttgctatgtgaaattt |
50947380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 50956707 - 50956789
Alignment:
| Q |
29 |
agtctccgtatttgggatcaagagttcatcaaagttgatcaccgtacattatttgctatagtcttggttagttattttagctt |
111 |
Q |
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| T |
50956707 |
agtctccgtaattgggaccttgaattcatcaaagttgatcgccacactttgtttgccctagtcttggttagttatttttgctt |
50956789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 33630606 - 33630659
Alignment:
| Q |
205 |
tagtttaagtattttggagttaaaattt-agattctgtttgcaatgtgaaattt |
257 |
Q |
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| T |
33630606 |
tagtttgattattttggagttaaaatttgagattctgtttgctatgtgaaattt |
33630659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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