View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_51 (Length: 257)
Name: NF1364_high_51
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_51 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 30022358 - 30022581
Alignment:
| Q |
30 |
cacatgaccactcacgtgacatgtttcagctctcaaccaatagtgtttattgtgttgttttagtacaagaggtctttagcccaaaagaaaggaaacttaa |
129 |
Q |
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| T |
30022358 |
cacatgaccactcacgtgacatgttccagctctcaaccaatagtgtttattgtgttgttttagtacaagagatctttagcccaaaagaaaggaaacttaa |
30022457 |
T |
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| Q |
130 |
cacttaattaaactaggtgttgcaacaccaacattatcaactaaataaaagacatgatcttaattggagtctaggggagagattctgcgcactctgttaa |
229 |
Q |
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| T |
30022458 |
cacttaattaaactaggtgttgcaacaccaacattatcaac----taaaagacatgatcttaattggagtctaggggagagattctgcacactctgttaa |
30022553 |
T |
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| Q |
230 |
cttgttatatttattaaccattcacaaa |
257 |
Q |
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| T |
30022554 |
cttgttatattcattaaccattcacaaa |
30022581 |
T |
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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 4085430 - 4085507
Alignment:
| Q |
91 |
agtacaagaggtctttagcccaaaagaaaggaaacttaacacttaattaaactaggtgttgcaacaccaacattatca |
168 |
Q |
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| T |
4085430 |
agtacaagagggccttagcccaaaagaaagaaaacttaacgcctaattaaacgaggtgttgcaacaccaacataatca |
4085507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 4411981 - 4411899
Alignment:
| Q |
93 |
tacaagaggtctttagcccaaaagaaaggaaacttaacacttaattaaactaggtgttgcaacacc-aacattatcaactaaa |
174 |
Q |
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| T |
4411981 |
tacaagagagctttagcccaaaagaaagaaaacttaatgcttaattaaacgaggtgttgcaataccaaacataatcaactaaa |
4411899 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 3575047 - 3575122
Alignment:
| Q |
93 |
tacaagaggtctttagcccaaaagaaaggaaacttaacacttaattaaactaggtgttgcaacaccaacattatca |
168 |
Q |
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| T |
3575047 |
tacaagaggtccttagcctaaaagaaagaaaacttagcgtctaattaaacgaggtgttgcaacaccaacataatca |
3575122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 50657232 - 50657317
Alignment:
| Q |
82 |
tgttgttttagtacaagaggtctttagcccaaaagaaaggaaacttaac----acttaattaaactaggtgttgcaacaccaacat |
163 |
Q |
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| T |
50657232 |
tgtttttttaatacaagaggaccttagttcaaaagaaaggaaacttaacgcttacttaattaagcgaggtgttgcaacactaacat |
50657317 |
T |
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