View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_6 (Length: 586)
Name: NF1364_high_6
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 30 - 574
Target Start/End: Complemental strand, 34426368 - 34425823
Alignment:
| Q |
30 |
gtttcttcccagaaagatccgtcaacatgcttaaaatacatatgttctatttatgattattatcgaaaggagtattgcacctttgataagagacaaaatt |
129 |
Q |
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| T |
34426368 |
gtttcttctcagaaagatccgtcaacatacttaaaatacatatgttctatttatgattattatcgaaaggagtattgcacctttgataagagacaaaatt |
34426269 |
T |
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| Q |
130 |
cttctaagattcacttgcctcttgtagtgaatacctctggctgggttaaaggtaagctcgtacattttgtatttttacgccacataaactactgcttttc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
34426268 |
cttctaagattcacttgcctcttgtagtgaatacctctggctgggttaaaggtaagctcggacattttgtatttttccgccacataaactactgcttttc |
34426169 |
T |
|
| Q |
230 |
tcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggcgatggttataaggtattagtgaacatgctaaaat |
329 |
Q |
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| T |
34426168 |
tcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggtgatggttataaggtattagtgaacatgctaaaat |
34426069 |
T |
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| Q |
330 |
atattggtcccactcatatagttaagataggcatatccactgatctgaagaatttacctgttggaaagttcgggtcaaatgggaagaatgacagaagagt |
429 |
Q |
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| T |
34426068 |
atattggtcccactcatatagttaagataggcatatccactgatctgaagaatatacctgttggaaagttcgggtcaaatgggaagaatgacagaagagt |
34425969 |
T |
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| Q |
430 |
taaattgattgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgctagtttatttcaatattttttaga |
529 |
Q |
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| T |
34425968 |
taaattgattgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgctagtttatttcaatattttttaga |
34425869 |
T |
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| Q |
530 |
ctt-aaagtattatagaataacagaatatccctacttgtttcccta |
574 |
Q |
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| T |
34425868 |
cttaaaagtattatagaataacaaaatatccctacttgtttcccta |
34425823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 190 - 372
Target Start/End: Complemental strand, 34419059 - 34418880
Alignment:
| Q |
190 |
tacattttgtatttttacgccacataaactactgcttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatt |
289 |
Q |
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||||||||||||||| || ||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34419059 |
tacattttgtattttgacttaacataaactactgctttcctggac---taacaacatatcaattattatgttactcattcagttggttttgtcttgcatt |
34418963 |
T |
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| Q |
290 |
tcaggcgatggttataaggtattagtgaacatgctaaaatatattggtcccactcatatagttaagataggcatatccactga |
372 |
Q |
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| T |
34418962 |
tcaggtgttggttatgaagtattagtggacatgctaaaatatattggtcccactcatgttgttaagatagacttatccactga |
34418880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 34419216 - 34419099
Alignment:
| Q |
70 |
tatgttctatttatgattattatcgaaaggagtattgcacctttgataagagacaaaattcttctaagattcacttgcctcttgtagtgaatacctctgg |
169 |
Q |
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||||||| ||||||||| |||||| |||| ||||| |||||||||||||| || ||||| ||||||| ||||| ||||||| |||||||||| ||||| |
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| T |
34419216 |
tatgttccatttatgatcattatcaaaagaagtatcgcacctttgataagcgaaaaaatgcttctaaaattcagacgcctcttatagtgaatacttctgg |
34419117 |
T |
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| Q |
170 |
ctgggttaaaggtaagct |
187 |
Q |
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||||||||||||| |||| |
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| T |
34419116 |
ctgggttaaaggtgagct |
34419099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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