View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_75 (Length: 217)
Name: NF1364_high_75
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_75 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 43263405 - 43263603
Alignment:
| Q |
19 |
gaaggaagagctgaacttttgagacatgcagcaggtcttgctgttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaagga |
118 |
Q |
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| T |
43263405 |
gaaggaagagctgaacttttgagacatgcagcaggtcttgctgttgtttctaagaagattctaagggtttcgacacttgcgaatgatagggctgtaagga |
43263504 |
T |
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| Q |
119 |
ttctgttgtctgtttcaagattctctgcaactcctaatgttgttcaagaaatgcttaaacttggtgttgtggccaagctttgtttggttcttcaagttg |
217 |
Q |
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| T |
43263505 |
ttctgttgtctgtttcaagattctctgcaactcctaatgttgttcaagaaatgcttaaacttggtgttgtggctaagctttgtttggttcttcaagttg |
43263603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 24890174 - 24890019
Alignment:
| Q |
62 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
161 |
Q |
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| T |
24890174 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagaattcttctatctgtttcaagattttctgctacacattttgttgt |
24890075 |
T |
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| Q |
162 |
tcaagaaatgcttaaacttggtgttgtggccaagctttgtttggttcttcaagttg |
217 |
Q |
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| T |
24890074 |
tcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttg |
24890019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 217
Target Start/End: Original strand, 24899793 - 24899948
Alignment:
| Q |
62 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
161 |
Q |
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| T |
24899793 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagtattcttctatctgtttcaagattttctgctacacattttgttgt |
24899892 |
T |
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| Q |
162 |
tcaagaaatgcttaaacttggtgttgtggccaagctttgtttggttcttcaagttg |
217 |
Q |
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| T |
24899893 |
tcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttg |
24899948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 217
Target Start/End: Original strand, 24907252 - 24907407
Alignment:
| Q |
62 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
161 |
Q |
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| T |
24907252 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagaattcttctatctgtttcaagattttctgctacacattttgttgt |
24907351 |
T |
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| Q |
162 |
tcaagaaatgcttaaacttggtgttgtggccaagctttgtttggttcttcaagttg |
217 |
Q |
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| T |
24907352 |
tcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttg |
24907407 |
T |
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