View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_high_80 (Length: 214)
Name: NF1364_high_80
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_high_80 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 36912851 - 36912987
Alignment:
| Q |
78 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaatttaccttcgaatactttattaaaacatgatataaatgg |
177 |
Q |
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| T |
36912851 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaaattacattccaatactttattaaaacatgatataaatgg |
36912950 |
T |
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| Q |
178 |
tgttgtgtttttgtttatcgtgaactttaattttatg |
214 |
Q |
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| T |
36912951 |
tgttgtgtttttgtttatcgtgaactttaattttatg |
36912987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 11166148 - 11166284
Alignment:
| Q |
78 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaatttaccttcgaatactttattaaaacatgatataaatgg |
177 |
Q |
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| T |
11166148 |
gaagaatatgaaggtttacaagaagaagaaaaaagagaagttgtggaggccatgctaaaaaattacattccaatactttattaaaacatgatataaatgg |
11166247 |
T |
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| Q |
178 |
tgttgtgtttttgtttatcgtgaactttaattttatg |
214 |
Q |
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| T |
11166248 |
tgttgtgtttttgtttatcgagaactttaattttatg |
11166284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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