View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_10 (Length: 557)
Name: NF1364_low_10
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 436
Target Start/End: Original strand, 8780262 - 8780683
Alignment:
| Q |
12 |
atagggttcattaacaccgagacttttaagaccacaagcaagcaccgaggtaataactagagcatggtgttagatagatccatgagatatgaattggtga |
111 |
Q |
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| T |
8780262 |
atagggttaattaacaccaagacttttaagaccacaagcaagaattgaggtaataactagagcatggtgttagatagatccatgggatatgaattggtga |
8780361 |
T |
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| Q |
112 |
gaacattatccatgtaatagtgtggatgacttggatccatcaccacaaactgcatgtcctctgaaagcttccagtgccgtttcctttgatgattaataaa |
211 |
Q |
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| T |
8780362 |
gaacattatccatgtaatagtgtggatgacttggatccatcaccacaaactgcatgtcctctgaaggcttccagtgccgttttctttgat-tttaataaa |
8780460 |
T |
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| Q |
212 |
ccagttgattatttgcttctaatcaacacctgttgaataattaggtaaaaagagaggtgtataaagcaatggtgaaaaatggacaagaatctttcgaaga |
311 |
Q |
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| T |
8780461 |
ccagttgtttatttgcttctgattaagacttgttgaataatcaggtgaaatgagaggtttataaagcaatgctgcaaaatgaacaagaatcttccgaaga |
8780560 |
T |
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| Q |
312 |
atcaaggtatgttgaccaagccatcagttatggcactcatatggcattcaagatcattttcaattatcaagtagaggaaaataactcagcataatttcaa |
411 |
Q |
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| T |
8780561 |
gtcaagctttgttgaccaagccatcacttaggggactc--atggcattcaagaccattttcaatgaccaagtagaggaaaataactcagcataattttaa |
8780658 |
T |
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| Q |
412 |
aaaatgcatcaccgaagatcaaaat |
436 |
Q |
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| T |
8780659 |
aaaatacatcatagaatatcaaaat |
8780683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 8791757 - 8791989
Alignment:
| Q |
12 |
atagggttcattaacaccgagacttttaagaccacaagcaagcaccgaggtaataactagagcatggtgttagatagatccatgagatatgaattggtga |
111 |
Q |
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| T |
8791757 |
atagggttaattaacacgaagacttttaagaccacaagcaagaattgaggtaataactagagcatggtgttagatagatccatgggatatgaattggtga |
8791856 |
T |
|
| Q |
112 |
gaacattatccatgtaatagtgtggatgacttggatccatcaccacaaactgcatgtcctctgaaagcttccagtgccgtttcctttgatgattaataaa |
211 |
Q |
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| T |
8791857 |
gaacattatccatgtaatagtgtggatgacttggatccatcaccacaaactgcatgtcctctgaaggcttccagtgccgtttcctt---tgattaataaa |
8791953 |
T |
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| Q |
212 |
ccagttgattatttgcttctaatcaacacctgttga |
247 |
Q |
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| T |
8791954 |
ccagttgtttatttgcttctgatcaagacctgttga |
8791989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 469 - 524
Target Start/End: Original strand, 8780783 - 8780838
Alignment:
| Q |
469 |
aattcatattttgtggtttttcttttgggtcttgatcaatccttgtgtgattgcta |
524 |
Q |
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| T |
8780783 |
aatttatattttgtggtttttcatttgggtcttgatcaatccttgtgttattgcta |
8780838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 34771312 - 34771225
Alignment:
| Q |
244 |
ttgaataattaggtaaaaagagaggtgtataaagcaatggtgaaaaatggacaagaatctttcgaagaatcaaggtatgttgaccaag |
331 |
Q |
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| T |
34771312 |
ttgaataattatgtaaaatgagaggtatataaagcaatgatgtaaaatggactataatctttcaaagaatcaagacttgttgaccaag |
34771225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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