View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1364_low_106 (Length: 212)

Name: NF1364_low_106
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1364_low_106
NF1364_low_106
[»] chr3 (1 HSPs)
chr3 (106-200)||(24226724-24226818)
[»] chr2 (2 HSPs)
chr2 (7-110)||(8780262-8780365)
chr2 (7-110)||(8791757-8791860)
[»] scaffold0110 (1 HSPs)
scaffold0110 (107-200)||(43871-43964)
[»] chr6 (7 HSPs)
chr6 (107-193)||(30149438-30149524)
chr6 (114-200)||(29949906-29949992)
chr6 (114-191)||(24897990-24898067)
chr6 (114-172)||(29953703-29953761)
chr6 (117-172)||(30154432-30154487)
chr6 (114-172)||(30053359-30053417)
chr6 (114-171)||(24942133-24942190)
[»] chr4 (1 HSPs)
chr4 (114-172)||(44262602-44262660)
[»] chr7 (1 HSPs)
chr7 (118-177)||(13093546-13093605)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 24226818 - 24226724
Alignment:
Q  106 cctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatattattgga 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24226818 cctatgaaatcccaaacatcatatattctccttgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatatttttgga 24226724  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 8780365 - 8780262
Alignment:
Q  7 gttctcaccaattcatatctcatggatctatctaacaccatgctctagttattacctcggtgcttgcttgtggtcttaaaagtctcggtgttaatgaacc 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||||| ||||    
T  8780365 gttctcaccaattcatatcccatggatctatctaacaccatgctctagttattacctcaattcttgcttgtggtcttaaaagtcttggtgttaattaacc 8780266  T
Q  107 ctat 110  Q
    ||||    
T  8780265 ctat 8780262  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 8791860 - 8791757
Alignment:
Q  7 gttctcaccaattcatatctcatggatctatctaacaccatgctctagttattacctcggtgcttgcttgtggtcttaaaagtctcggtgttaatgaacc 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||  |||||||| ||||    
T  8791860 gttctcaccaattcatatcccatggatctatctaacaccatgctctagttattacctcaattcttgcttgtggtcttaaaagtcttcgtgttaattaacc 8791761  T
Q  107 ctat 110  Q
    ||||    
T  8791760 ctat 8791757  T

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Target: scaffold0110 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 43871 - 43964
Alignment:
Q  107 ctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatattattgga 200  Q
    |||| ||||||||| ||||| | ||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||||    
T  43871 ctataaaatcccaagcatcagacattctccctaatttgcaaagtccatcaattaaggaattgtatgttacagtgttaggaaccatatttttgga 43964  T

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Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 30149524 - 30149438
Alignment:
Q  107 ctatgaaatcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatat 193  Q
    |||| ||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||    
T  30149524 ctataaaatcccaaacatcagatactctccctaatttgcaaagtccatcaataagggaattgtatgttacagtgttaggaatcatat 30149438  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 29949906 - 29949992
Alignment:
Q  114 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccatattattgga 200  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| || |||||||||| |||||| || |||  ||||||| ||||    
T  29949906 atcccaaacatcagagattctccctgatttgcaaagtccatcaataagagaattgtatgatacagtatctggagtcatattactgga 29949992  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 24898067 - 24897990
Alignment:
Q  114 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctacagtgtcaggaaccat 191  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||| || ||| ||||||||||| | |||||| ||||    
T  24898067 atcccaaacatcagatattttccccgatttgcaaagtccatcaataagtgaactgtatgctacaatatcaggagccat 24897990  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 29953703 - 29953761
Alignment:
Q  114 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatg 172  Q
    ||||||||||||| | || |||||||||||||||||||||||||| || ||||||||||    
T  29953703 atcccaaacatcagagatgctccctgatttgcaaagtccatcaataagagaattgtatg 29953761  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 30154487 - 30154432
Alignment:
Q  117 ccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatg 172  Q
    |||||||||| | |||||||| ||||||||||| || ||||| |||||||||||||    
T  30154487 ccaaacatcagagattctccccgatttgcaaagcccgtcaataagggaattgtatg 30154432  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Complemental strand, 30053417 - 30053359
Alignment:
Q  114 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatg 172  Q
    ||||||||||||| | ||||| || |||||||||||||||||||| || ||| ||||||    
T  30053417 atcccaaacatcagagattcttcccgatttgcaaagtccatcaataagtgaactgtatg 30053359  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 24942190 - 24942133
Alignment:
Q  114 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtat 171  Q
    ||||||||||||| | ||||| || |||||||||||||||||||| || ||| |||||    
T  24942190 atcccaaacatcagagattcttcccgatttgcaaagtccatcaataagcgaactgtat 24942133  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 44262602 - 44262660
Alignment:
Q  114 atcccaaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatg 172  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||    
T  44262602 atcccaaacatcagatattcttcctgatttgcaaagtccatcaataagtgaattgtatg 44262660  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 13093546 - 13093605
Alignment:
Q  118 caaacatcatatattctccctgatttgcaaagtccatcaattagggaattgtatgctaca 177  Q
    ||||||||||| | |||| |||||||||||||||||||||| || |||||||||| ||||    
T  13093546 caaacatcatagaatctctctgatttgcaaagtccatcaataagtgaattgtatgttaca 13093605  T

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