View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1364_low_11 (Length: 540)
Name: NF1364_low_11
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_11 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 39 - 526
Target Start/End: Complemental strand, 4600730 - 4600243
Alignment:
| Q |
39 |
ttgttttagcataattggtctcttgtgtaaaacattagtttacatttcatctcattctacatattctttgacaggacctgtcacattgtactgaaacaac |
138 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
4600730 |
ttgttttagcataattggtctcttgtgtaaaacattagtttacatttcatctcattctacatattctttgacagaacctgtcacattgtactgaaacaac |
4600631 |
T |
|
| Q |
139 |
tttcaaaactcttcaaaacaagcacaagccactagtttttaaggatttaaggaaaatttggaacaagtatgatcctaatcttccttgggagaagggatat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4600630 |
tttcaaaactcttcaaaacaagcacaagccactagtttttaaggatttaaggaaaatttggaacaagtatgatcctaatcttccttgggagaagggatat |
4600531 |
T |
|
| Q |
239 |
tacaatgagtcaaacacattgctgttggatgattctccctacaaggcactgcttaatcctgtaaattaactaacccttcctttgtatttttcttcattta |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4600530 |
tacaatgagtcaaacacattgctgttggatgattctccctacaaggcactgcttaatcctgtaaatcaactaacccttcctttgtatttttcttcattta |
4600431 |
T |
|
| Q |
339 |
tcatgcnnnnnnncaactatcatgtcctaacttatgcttaatgttttgataaattattgtagccatacaactcaatctttcctcatacattcagttatga |
438 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4600430 |
tcatgctttttttcaacaatcatgtcctaacttatgcttaatgttttgataaattattgtagccatacaactcaatctttcctcatacattcagttatga |
4600331 |
T |
|
| Q |
439 |
gaatcagaatgacacttcactaggtatgttacaaaatgacccttcactatttgtaaattcataaggttttacttggttttttcccttt |
526 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4600330 |
gaatcagaatgacacttcactaggtatgttacaaattgacccttcactatttgtaaattcataaggttttacttggttttttcccttt |
4600243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 87 - 518
Target Start/End: Complemental strand, 4573277 - 4572848
Alignment:
| Q |
87 |
atctcattctacatattctttgacaggacctgtcacattgtactgaaacaactttcaaaactcttcaaaacaagcacaagccactagtttttaaggattt |
186 |
Q |
| |
|
||||||| |||||||||||||||||||| | |||||||||||||||||| ||||| ||||| || | ||||||| |||||||||||||| ||||||| | |
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|
| T |
4573277 |
atctcatcctacatattctttgacaggatatatcacattgtactgaaacagctttccaaactgttgagaacaagcgcaagccactagtttgtaaggatct |
4573178 |
T |
|
| Q |
187 |
aaggaaaatttggaacaagtatgatcctaatcttccttgggagaagggatattacaatgagtcaaacacattgctgttggatgattctccctacaaggca |
286 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
4573177 |
aaggaaaatttgggacaagtatgatccaaatcttccttgggaaaagggatattacaatgaatcaaacacattgcttttggatgattctccccacaaggca |
4573078 |
T |
|
| Q |
287 |
ctgcttaatcctgtaaattaactaacccttcctttgtatttttcttcatttatcatgcnnnnnnncaactatcatgtcctaacttatgcttaatgttttg |
386 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
4573077 |
ttgcttaatcctgtaaataaactaacccttcctttgtatttttcttcatttatcatgctttttttcgactatcatgtcctaacttatgcttaatgttttg |
4572978 |
T |
|
| Q |
387 |
ataaattattgtagccatacaactcaatctttcctcatacattcagttatgagaatcagaatgacacttcactaggtatgttacaaaatgacccttcact |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | |||| | |
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|
| T |
4572977 |
ataaattattgtagccatacaactcaatctttcctcatacattcagttatgagaatcagaatgacaattcactaggtatgttacacaatga-ctttca-t |
4572880 |
T |
|
| Q |
487 |
atttgtaaattcataaggttttacttggtttt |
518 |
Q |
| |
|
|| |||||| |||||||||||| |||| |||| |
|
|
| T |
4572879 |
atatgtaaagtcataaggttttgcttgatttt |
4572848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 38 - 513
Target Start/End: Complemental strand, 4592296 - 4591808
Alignment:
| Q |
38 |
attgttttagcataattggtctcttgtgtaaaacattagtttacatttcatctcattctacatattctttgacaggacctgtcacattgtactgaaacaa |
137 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||||||| || || ||| |||||||||||||||||||||||||||| |||| ||||||||||||||| |
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|
| T |
4592296 |
attgctttagcataattggtctctagagtaaaacattggtctagatta-atctcattctacatattctttgacaggatatgtctcattgtactgaaacag |
4592198 |
T |
|
| Q |
138 |
ctttcaaaactcttcaaaacaagcacaagccactagtttttaaggatttaaggaaaatttggaacaagtatgatcctaatcttccttgggagaagggata |
237 |
Q |
| |
|
|||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
4592197 |
ctttcaaaactcttgagaacaagcgcaagccactagtttttaaggatttaaggaaaatttgggacaagtatgatccgaatcttccttgggagaggggata |
4592098 |
T |
|
| Q |
238 |
ttacaatgagtcaaacacattgctgttggatgattctccctacaaggcactgcttaatcctgtaaattaactaacccttccttt--gtatttttcttcat |
335 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||||| |||||||| ||||||||||| |||||| ||| ||| ||| |||| ||||||| ||||| |
|
|
| T |
4592097 |
ttacaatgagtcgaacacattattgctggatgattctccttacaaggcgctgcttaatccagtaaataaacgaacactttctttacatattttttttcat |
4591998 |
T |
|
| Q |
336 |
ttatcatgcnnnnnnncaactat------------catgtcctaacttatgcttaatgttttgataaattattgtagccatacaactcaatctttcctca |
423 |
Q |
| |
|
|||||| || || | || |||| || ||| |||| ||||||| | || |||||||| |||||||||||||||||||||| || |
|
|
| T |
4591997 |
ttatcaagcttattttcagccatcacatattgtgacatggcccaacctatgattaatgtgtcaatgaattattgcagccatacaactcaatctttccgca |
4591898 |
T |
|
| Q |
424 |
tacattcagttatgagaatcagaatgacacttcactaggtatgttacaaaatgacccttca-ctatttgtaaattcataaggttttacttg |
513 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |||||||| |||||||||| || || |||||||||| |||||||||||| |||| |
|
|
| T |
4591897 |
tacattcagttatgagagtcagaatgacaattcattaggtatggtacaaaatga-tctacatatatttgtaaactcataaggttttgcttg |
4591808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 87 - 316
Target Start/End: Complemental strand, 4584504 - 4584275
Alignment:
| Q |
87 |
atctcattctacatattctttgacaggacctgtcacattgtactgaaacaactttcaaaactcttcaaaacaagcacaagccactagtttttaaggattt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
4584504 |
atctcattctacatattctttgacaggatttgtcacattgtactgaaacagctttcaaaactcttgagaacaagcgcaagccactagtttttaaggattt |
4584405 |
T |
|
| Q |
187 |
aaggaaaatttggaacaagtatgatcctaatcttccttgggagaagggatattacaatgagtcaaacacattgctgttggatgattctccctacaaggca |
286 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| || ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
4584404 |
aaggaaaatttgggacaagtatgatccgaatcttccttgggagaagaaatattacaatgactcgaacacgttgctgctggatgattctccctacaaggca |
4584305 |
T |
|
| Q |
287 |
ctgcttaatcctgtaaattaactaaccctt |
316 |
Q |
| |
|
| ||||||||||||||| ||||||||||| |
|
|
| T |
4584304 |
ttccttaatcctgtaaataaactaaccctt |
4584275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 83 - 312
Target Start/End: Complemental strand, 4605723 - 4605495
Alignment:
| Q |
83 |
tttcatctcattctacatattctttgacaggacctgtcacattgtactgaaacaactttcaaaactcttcaaaacaagcacaagccactagtttttaagg |
182 |
Q |
| |
|
|||||||||| |||||||||| |||||||| | | ||||| ||||||| |||| | ||| |||||| || |||||| |||| || | || ||||||| |
|
|
| T |
4605723 |
tttcatctcaatctacatatt-tttgacagagcatttcacaatgtactgtgacaaatatcagtactcttgaagacaagcgcaagacagtggtgtttaagg |
4605625 |
T |
|
| Q |
183 |
atttaaggaaaatttggaacaagtatgatcctaatcttccttgggagaagggatattacaatgagtcaaacacattgctgttggatgattctccctacaa |
282 |
Q |
| |
|
|| | || ||||||||| | ||||| ||||| |||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
4605624 |
atctgagaaaaatttgggataagtacgatccgaatcttccttgggagaaggggtactacaatgaatcaaatacattgcttttggatgactctccctacaa |
4605525 |
T |
|
| Q |
283 |
ggcactgcttaatcctgtaaattaactaac |
312 |
Q |
| |
|
|| | ||||||||||||||| ||||||| |
|
|
| T |
4605524 |
ggggttacttaatcctgtaaataaactaac |
4605495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 366 - 477
Target Start/End: Complemental strand, 4584219 - 4584109
Alignment:
| Q |
366 |
taacttatgcttaatgttttgataaattattgtagccatacaactcaatctttcctcatacattcagttatgagaatcagaatgacacttcactaggtat |
465 |
Q |
| |
|
||||||||| ||| ||| ||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
4584219 |
taacttatggttattgtgttgatgaattattgcagccacacaactcaatctttccgcatacattcagttatgagaatcagaatgacaattcattaggtat |
4584120 |
T |
|
| Q |
466 |
gttacaaaatga |
477 |
Q |
| |
|
| |||||||||| |
|
|
| T |
4584119 |
g-tacaaaatga |
4584109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 359 - 479
Target Start/End: Complemental strand, 4605453 - 4605333
Alignment:
| Q |
359 |
catgtcctaacttatgcttaatgttttgataaattattgtagccatacaactcaatctttcctcatacattcagttatgagaatcagaatgacacttcac |
458 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| || |||||| |||| ||| |||| |||| |||| |
|
|
| T |
4605453 |
catgtcctaacttatgtttaatgttttgatacattgttgtagccatacaactcaatctttccacactcattcacttatcggaaaaagaaggacaaatcac |
4605354 |
T |
|
| Q |
459 |
taggtatgttacaaaatgacc |
479 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
4605353 |
taggtatggtacaaaatgacc |
4605333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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