View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1364_low_12 (Length: 518)

Name: NF1364_low_12
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1364_low_12
NF1364_low_12
[»] chr6 (5 HSPs)
chr6 (56-518)||(33823125-33823585)
chr6 (9-53)||(33823867-33823911)
chr6 (373-452)||(31789943-31790022)
chr6 (188-246)||(10400166-10400224)
chr6 (191-252)||(2548316-2548379)
[»] chr4 (9 HSPs)
chr4 (366-452)||(34786577-34786663)
chr4 (188-253)||(19422315-19422380)
chr4 (373-426)||(39635408-39635461)
chr4 (189-233)||(7730513-7730557)
chr4 (188-252)||(9843775-9843839)
chr4 (197-253)||(24160603-24160659)
chr4 (369-413)||(35752799-35752843)
chr4 (197-251)||(24091371-24091424)
chr4 (214-252)||(55994296-55994334)
[»] chr2 (3 HSPs)
chr2 (188-252)||(10150652-10150716)
chr2 (188-252)||(26484193-26484257)
chr2 (213-253)||(9478221-9478261)
[»] chr1 (3 HSPs)
chr1 (188-234)||(21516255-21516301)
chr1 (188-253)||(30815743-30815809)
chr1 (197-253)||(40357994-40358050)
[»] chr8 (4 HSPs)
chr8 (188-233)||(40279724-40279769)
chr8 (208-252)||(4558715-4558759)
chr8 (204-252)||(32181262-32181310)
chr8 (207-255)||(44617893-44617941)
[»] chr7 (6 HSPs)
chr7 (457-514)||(33810973-33811030)
chr7 (197-253)||(35536013-35536069)
chr7 (215-253)||(27481402-27481440)
chr7 (201-250)||(44348505-44348554)
chr7 (188-252)||(39539870-39539934)
chr7 (208-252)||(47528042-47528086)
[»] chr5 (4 HSPs)
chr5 (188-253)||(40499783-40499848)
chr5 (188-253)||(11095577-11095642)
chr5 (188-232)||(15985372-15985416)
chr5 (189-253)||(36638644-36638708)
[»] chr3 (4 HSPs)
chr3 (188-252)||(44237390-44237454)
chr3 (188-255)||(41159006-41159073)
chr3 (203-253)||(44488796-44488846)
chr3 (188-253)||(48528475-48528540)


Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 56 - 518
Target Start/End: Complemental strand, 33823585 - 33823125
Alignment:
Q  56 tcttttcttaatgaatactcttgtttctctggtttggaattgagtaagaagggatatattattaacaacaattcaggaatgaccagtcagaattttcatt 155  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  33823585 tcttttcttaatgaatactcttgcttctctggtttggaattgagtaagaagggaaatattattaacaacaattcaggaatgaccagtcagaattttcatg 33823486  T
Q  156 gtatcctcattggtaaaatcaatttcaatcaggtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataacta 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33823485 gtatcctcattggtaaaatcaatttcaatcaggtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataatta 33823386  T
Q  256 tcaaaagaatagtgttaacctagagctcacaaagagatagtgtagtctctagcacattgtataactacttgtaactagatataactgtcctaaccttagt 355  Q
    |||||||||||  ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823385 tcaaaagaata--gttaatctagagctcacaaagagatagtgtaatctctagcacattgtataactacttgtaactagatataactgtcctaaccttagt 33823288  T
Q  356 ttggctccccaaaatttaaattttctcttggcaattaattcttgctagacttcctactcgctcaaacttatttggtagaggagttttgccggttggtccg 455  Q
    ||| ||||  ||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  33823287 ttgactccaaaaagttcaaattttctcttggcaattaattattgctagacttcctactcgctcaaacttatctcgtagaggagttttgccagttggtccg 33823188  T
Q  456 agtattcaagaggtagaggatcatttgttttgtagatactactttattggaaggatttgttat 518  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33823187 agtattcaagaggtggaggatcacttgttttgtagatactactttgttggaaggatttgttat 33823125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 33823911 - 33823867
Alignment:
Q  9 caacaatatcaaaaactactcacatacaagaagaaattcttatac 53  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  33823911 caacaaaaccaaaaactactcacatacaagaagaaattcttatac 33823867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 452
Target Start/End: Complemental strand, 31790022 - 31789943
Alignment:
Q  373 aaattttctcttggcaattaattcttgctagacttcctactcgctcaaacttatttggtagaggagttttgccggttggt 452  Q
    |||||||||| || ||||||| | ||| ||||||||| |||||||||||||||| | | ||||||| |||||| ||||||    
T  31790022 aaattttctcatgacaattaacttttggtagacttccgactcgctcaaacttatcttgaagaggagctttgccagttggt 31789943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 10400166 - 10400224
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctattt 246  Q
    |||||||| |||||| |||||||  |||||| ||||||||||||||| |||||||||||    
T  10400166 gtttggataaacaacataattaagggcttatcatataaatgtttatgtataagctattt 10400224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 2548379 - 2548316
Alignment:
Q  191 tggatcaacaacttaattaaacgcttattatataaa--tgtttatgcataagctatttctataa 252  Q
    ||||| || |||||||||||||| |||||||||| |  |||||||| ||||| |||||||||||    
T  2548379 tggataaataacttaattaaacgtttattatatataagtgtttatgtataagttatttctataa 2548316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 366 - 452
Target Start/End: Original strand, 34786577 - 34786663
Alignment:
Q  366 aaaatttaaattttctcttggcaattaattcttgctagacttcctactcgctcaaacttatttggtagaggagttttgccggttggt 452  Q
    ||||||||||||||||  |||||||||||  ||| ||||||||| || ||||||||||||| | | |||||||  ||||||||||||    
T  34786577 aaaatttaaattttcttctggcaattaatctttggtagacttccgacacgctcaaacttatcttgaagaggagcgttgccggttggt 34786663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 19422315 - 19422380
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataac 253  Q
    |||||||| |||| ||||||||| ||||||| ||||||||| ||||| ||||| ||||||||||||    
T  19422315 gtttggataaacagcttaattaagcgcttatcatataaatgcttatgtataagttatttctataac 19422380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 39635408 - 39635461
Alignment:
Q  373 aaattttctcttggcaattaattcttgctagacttcctactcgctcaaacttat 426  Q
    ||||||||||||||||||||||| ||| ||||||||  ||||||||||||||||    
T  39635408 aaattttctcttggcaattaatttttggtagacttctgactcgctcaaacttat 39635461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 7730513 - 7730557
Alignment:
Q  189 tttggatcaacaacttaattaaacgcttattatataaatgtttat 233  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||    
T  7730513 tttggataaacaacttaattaagcacttattatataaatgtttat 7730557  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 9843839 - 9843775
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 252  Q
    |||||||| |||||||||| |||  |||||| |||||| || ||||| |||||||||||||||||    
T  9843839 gtttggataaacaacttaaataagtgcttatcatataactgcttatgtataagctatttctataa 9843775  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 24160659 - 24160603
Alignment:
Q  197 aacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataac 253  Q
    |||||||||||||||||||||| |||||| || ||||  ||||||| ||||||||||    
T  24160659 aacaacttaattaaacgcttatcatataagtgcttataaataagctttttctataac 24160603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 413
Target Start/End: Complemental strand, 35752843 - 35752799
Alignment:
Q  369 atttaaattttctcttggcaattaattcttgctagacttcctact 413  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||    
T  35752843 atttaaattttatcttggtaattaattcttggtagacttcctact 35752799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 24091371 - 24091424
Alignment:
Q  197 aacaacttaattaaacgcttattatataaatgtttatgcataagctatttctata 251  Q
    |||||||||||||| | ||||| ||||||||| | ||||||||||||||||||||    
T  24091371 aacaacttaattaagcacttatcatataaatgct-atgcataagctatttctata 24091424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 55994334 - 55994296
Alignment:
Q  214 cttattatataaatgtttatgcataagctatttctataa 252  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  55994334 cttattatataaatgcttatgtataagctatttctataa 55994296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 10150652 - 10150716
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 252  Q
    |||| ||| |||||||||||||| | |||||||||||| |||||||| ||||| |||||||||||    
T  10150652 gtttagataaacaacttaattaagcacttattatataagtgtttatgtataagttatttctataa 10150716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 26484257 - 26484193
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 252  Q
    |||||||| |||||||||||||| |  |||| |||||| || ||||| |||||||||||||||||    
T  26484257 gtttggataaacaacttaattaatcatttatcatataagtgcttatggataagctatttctataa 26484193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 9478221 - 9478261
Alignment:
Q  213 gcttattatataaatgtttatgcataagctatttctataac 253  Q
    |||||| |||||| |||||||| ||||||||||||||||||    
T  9478221 gcttatcatataagtgtttatgtataagctatttctataac 9478261  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 21516255 - 21516301
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatg 234  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||    
T  21516255 gtttggataaacaacttaattaaacgcttataacataaatgtttatg 21516301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 30815809 - 30815743
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaat-gtttatgcataagctatttctataac 253  Q
    ||||||||||||||||||||||| ||||||| |||||| |  ||||||  |||||| ||||||||||    
T  30815809 gtttggatcaacaacttaattaagcgcttatcatataattactttatgtctaagctttttctataac 30815743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 40358050 - 40357994
Alignment:
Q  197 aacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataac 253  Q
    ||||| ||||||||  ||||||||||||| ||  |||| ||||||||||||||||||    
T  40358050 aacaaattaattaagtgcttattatataagtgactatgtataagctatttctataac 40357994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 40279769 - 40279724
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttat 233  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||    
T  40279769 gtttggatcaacaatttaattaagcgcttataatataaatgtttat 40279724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 4558715 - 4558759
Alignment:
Q  208 taaacgcttattatataaatgtttatgcataagctatttctataa 252  Q
    |||||| ||||||| ||| |||||||| |||||||||||||||||    
T  4558715 taaacgtttattatgtaagtgtttatgtataagctatttctataa 4558759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 32181262 - 32181310
Alignment:
Q  204 taattaaacgcttattatataaatgtttatgcataagctatttctataa 252  Q
    |||||||  |||||||  ||||||||||||| |||||||||||||||||    
T  32181262 taattaagtgcttattgaataaatgtttatgtataagctatttctataa 32181310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 44617941 - 44617893
Alignment:
Q  207 ttaaacgcttattatataaatgtttatgcataagctatttctataacta 255  Q
    |||||| ||| ||||||||  ||||||| ||||||||||||||||||||    
T  44617941 ttaaacacttgttatataacagtttatgtataagctatttctataacta 44617893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 457 - 514
Target Start/End: Complemental strand, 33811030 - 33810973
Alignment:
Q  457 gtattcaagaggtagaggatcatttgttttgtagatactactttattggaaggatttg 514  Q
    ||||||||||||| ||||||||||||||||||||||    |||||||| |||||||||    
T  33811030 gtattcaagaggtggaggatcatttgttttgtagatgtagctttattgcaaggatttg 33810973  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 35536013 - 35536069
Alignment:
Q  197 aacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataac 253  Q
    |||||||||||| | ||||||| ||||||| | ||||| ||||||||||||||||||    
T  35536013 aacaacttaattgagcgcttatcatataaaggcttatgtataagctatttctataac 35536069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 27481440 - 27481402
Alignment:
Q  215 ttattatataaatgtttatgcataagctatttctataac 253  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  27481440 ttattatataagtgtttatgtataagctatttctataac 27481402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 44348505 - 44348554
Alignment:
Q  201 acttaattaaacgcttattatataaatgtttatgcataagctatttctat 250  Q
    |||||||||| |||||||||| ||| |||||| | |||||||||||||||    
T  44348505 acttaattaatcgcttattatgtaagtgtttaagtataagctatttctat 44348554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 39539934 - 39539870
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 252  Q
    |||||||| ||||||||||||||  |||||| |||||| || || || |||||||||||| ||||    
T  39539934 gtttggataaacaacttaattaagtgcttatcatataactgcttttgtataagctatttcgataa 39539870  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 47528086 - 47528042
Alignment:
Q  208 taaacgcttattatataaatgtttatgcataagctatttctataa 252  Q
    ||||| ||||||||| || |||||||| |||||||||||||||||    
T  47528086 taaacacttattatacaagtgtttatgtataagctatttctataa 47528042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 40499848 - 40499783
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataac 253  Q
    |||||||| ||||||||||||||| |||||| |||||| || ||||| | ||| ||||||||||||    
T  40499848 gtttggataaacaacttaattaaaagcttatcatataagtgcttatgtacaagttatttctataac 40499783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 11095642 - 11095577
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataac 253  Q
    |||||||| |||||||||| ||||| ||||  |||||| || ||||| |||| |||||||||||||    
T  11095642 gtttggataaacaacttaactaaacacttaccatataagtgattatgtataaactatttctataac 11095577  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 15985416 - 15985372
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgttta 232  Q
    |||||||||||||||||||||||  || ||| |||||||||||||    
T  15985416 gtttggatcaacaacttaattaagagcatatcatataaatgttta 15985372  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 36638644 - 36638708
Alignment:
Q  189 tttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataac 253  Q
    ||||||| |||||||||||||| | ||||| |||||  |||| ||| |||| |||||||||||||    
T  36638644 tttggataaacaacttaattaagcacttatcatataggtgttaatgtataaactatttctataac 36638708  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 44237390 - 44237454
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataa 252  Q
    |||||||| ||||||||||||||  |||| | || |||||| ||||||||||||||||| |||||    
T  44237390 gtttggataaacaacttaattaagggcttctcatctaaatgcttatgcataagctatttttataa 44237454  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 41159006 - 41159073
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataacta 255  Q
    |||||||| | ||||||||||||||||||||  ||||| || ||||| ||||| |||| |||||||||    
T  41159006 gtttggataaccaacttaattaaacgcttatcgtataagtgcttatgtataagttattcctataacta 41159073  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 44488796 - 44488846
Alignment:
Q  203 ttaattaaacgcttattatataaatgtttatgcataagctatttctataac 253  Q
    |||||||| |||||||| ||||  |||||||| ||||||||||||||||||    
T  44488796 ttaattaagcgcttattgtataggtgtttatgtataagctatttctataac 44488846  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 48528475 - 48528540
Alignment:
Q  188 gtttggatcaacaacttaattaaacgcttattatataaatgtttatgcataagctatttctataac 253  Q
    |||||||| ||||||| ||||||  |||||| |||||| |  ||||| ||||||||||||||||||    
T  48528475 gtttggataaacaactgaattaagagcttatcatataagtacttatgtataagctatttctataac 48528540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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