View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_20 (Length: 437)
Name: NF1364_low_20
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 6564904 - 6565136
Alignment:
| Q |
1 |
ttgattttcaccgaaactcatggactacttaagtctaaccacttggttttgaatataggcttctcatgaagtaacataacatctcttagaaaaattgaga |
100 |
Q |
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| T |
6564904 |
ttgattttcaccgaaactcatcgactacttaagtctaaccacttggttttgaatataggcttctcatgaagtaacataacatctcttagaaaaattgaga |
6565003 |
T |
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| Q |
101 |
aaaataagaaattggtttaaaagcataacataaactaagtcttactttaacagtgaggaatgatgttttaattccaaatctgagaactatgttatttcat |
200 |
Q |
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| T |
6565004 |
aaaataagaaattggtttaaaagcataacataaactaagt-ttactttaacagtgaggaatgatgttttaattccaaatctgagaactatgttatttcat |
6565102 |
T |
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| Q |
201 |
ttctcatgagaaacatatagtctttgtccttcct |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6565103 |
ttctcatgagaaacatatagtctttgtccttcct |
6565136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 276 - 409
Target Start/End: Complemental strand, 14333080 - 14332947
Alignment:
| Q |
276 |
gctgttgcgtgaaatgttgaaaacatgtgaatggttttatgtttaacaagctttattgtggctgattcctgttgagtttttcttatatcactgagaagct |
375 |
Q |
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| T |
14333080 |
gctgttgcgtgaaatgttgaaaacatgtgaatggttttatgtttaacaagctttattgtggctgattcctgttgagtttttcttatatcactgagaagct |
14332981 |
T |
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| Q |
376 |
caagtcacgacacgaagtggtagataaactgttg |
409 |
Q |
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| T |
14332980 |
caagtcacggcacgaagtggtagataaactgttg |
14332947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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