View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1364_low_21 (Length: 426)
Name: NF1364_low_21
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 328
Target Start/End: Complemental strand, 7038462 - 7038140
Alignment:
| Q |
7 |
gtatcataggggctctcagatgcggaggttttgatcaagagagatcttctcatctctccgatgttaatttgagtggactaatttagcttcttcnnnnnnn |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7038462 |
gtatcattggggctctcagatgcggaggttttgatcaagagagatcttctcatctctccgatgttaatttgagtggactaatttagcttcttcaaaaaaa |
7038363 |
T |
|
| Q |
107 |
nnnnnnnn-cttctcaattatttaagcttacgaatctaaactgcaatatccagtggcaaaaattgagagctagatggctgaaggatatggggatgcaaac |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7038362 |
aaaaaaaatcttctcaattatttaagcttacgaatctaaactgcaatatccagtggcaaaaattgagagctagatggctgaaggatatggggatgcaaac |
7038263 |
T |
|
| Q |
206 |
actaagtactttcatgggtgtataaataagagaagaaaagaacatgaaattcttactttggagtggaatggcagaaggttgaatgaagcggacgacataa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7038262 |
actaagtactttcatgggtgtataaataagagaagaaaagaacatgaaattcttactttggagtggaatggcagaaggttgaatgaagcggacgacataa |
7038163 |
T |
|
| Q |
306 |
agaaagccatcgttgatcatttt |
328 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7038162 |
agaaagccatcgttgatcatttt |
7038140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 7973631 - 7973671
Alignment:
| Q |
59 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
99 |
Q |
| |
|
|||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
7973631 |
tctctctgatgtcaatttgggtggactaatttagcttcttc |
7973671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 10499110 - 10499070
Alignment:
| Q |
59 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
99 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
10499110 |
tctctccgatgtcaatttgggtgggctaatttagcttcttc |
10499070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 51903879 - 51903839
Alignment:
| Q |
59 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
99 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
51903879 |
tctctccggtgtcaatttgagtgggctaatttagcttcttc |
51903839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 9187494 - 9187530
Alignment:
| Q |
63 |
tccgatgttaatttgagtggactaatttagcttcttc |
99 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9187494 |
tccgatgtcaatttgagtggactaatttagcttcttc |
9187530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 11099842 - 11099882
Alignment:
| Q |
59 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
99 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
11099842 |
tctctccgatgtcaatttgaatggactaatttagtttcttc |
11099882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 12633084 - 12633124
Alignment:
| Q |
59 |
tctctccgatgttaatttgagtggactaatttagcttcttc |
99 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
12633084 |
tctctccaatgtcaatttaagtggactaatttagcttcttc |
12633124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University