View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1364_low_23 (Length: 405)
Name: NF1364_low_23
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 30 - 394
Target Start/End: Complemental strand, 11040782 - 11040418
Alignment:
| Q |
30 |
atcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11040782 |
atcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctct |
11040683 |
T |
|
| Q |
130 |
taatttctacataagagtatctggttggcttaagagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11040682 |
taatttctacataagagtatctggttggcttaagagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtc |
11040583 |
T |
|
| Q |
230 |
ataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacgataattttc |
329 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11040582 |
ataaatatggaagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacgataattttc |
11040483 |
T |
|
| Q |
330 |
ttacaagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcct |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11040482 |
ttacaagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcct |
11040418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 394
Target Start/End: Complemental strand, 11026079 - 11025714
Alignment:
| Q |
30 |
atcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctct |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11026079 |
atcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctct |
11025980 |
T |
|
| Q |
130 |
taatttctacataagagtatctggttggcttaagagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtc |
229 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11025979 |
tgatttctacataagagtatctggtgggcttaagaactctatagtcttctaaaaacttttctacaattgcttgtttttctttctttagtatgtaagagtc |
11025880 |
T |
|
| Q |
230 |
ataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacgataattttc |
329 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |
|
|
| T |
11025879 |
ataaatatggtagattccaccaatcaacaagataaaaaacaatgatcctaaaattgatcctgcatttatgaaagctaacttaagaaaaatgataattatc |
11025780 |
T |
|
| Q |
330 |
ttacaagtt-ataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcct |
394 |
Q |
| |
|
||||| ||| | ||| |||| |||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
11025779 |
ttacaggttaagaataaaaacgaagcaaatttgaacttaaaagctgacctgtgttcactagagcct |
11025714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 389
Target Start/End: Complemental strand, 10930419 - 10930060
Alignment:
| Q |
30 |
atcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctct |
129 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | |||||||||||||||||| | |
|
|
| T |
10930419 |
atcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcgccaaaattatttgtgattcttt |
10930320 |
T |
|
| Q |
130 |
taatttctacataagagtatctggttggcttaagagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtc |
229 |
Q |
| |
|
|||||||| |||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |
|
|
| T |
10930319 |
taatttcttcatatgagtatcttgtgggcttaagagctctataatcttctaaaaacttttctataatggcttgtttttctttcttttgtatgtaagagtc |
10930220 |
T |
|
| Q |
230 |
ataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacgataattttc |
329 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
10930219 |
ataaatatggtagattgcaccagtcaacaagacaaaaaataacgaacctaaaattgatcctgcatttatgaaaattaatttaagaaaaatgataattttc |
10930120 |
T |
|
| Q |
330 |
ttacaagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactag |
389 |
Q |
| |
|
|| | ||| |||||||| |||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
10930119 |
atatagattaaaattaaaataaagcaaacttaaacttaaaagctgacctgtgttgactag |
10930060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 393
Target Start/End: Complemental strand, 10992623 - 10992260
Alignment:
| Q |
30 |
atcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctct |
129 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | ||| |||||||||||||||| |
|
|
| T |
10992623 |
atcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctct |
10992524 |
T |
|
| Q |
130 |
taatttctacataagagtatctggttggcttaagagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtc |
229 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
10992523 |
taatttctacataagagtatctcgtgggtttaagagctctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaagagtc |
10992424 |
T |
|
| Q |
230 |
ataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaacgataattttc |
329 |
Q |
| |
|
||||| ||||||||| |||| | ||||||| ||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
10992423 |
ataaacgtggtagactgcaccggttaacaagacaaaaaacagcgatcctagaattgatcctggatttatgaaaactaatttaagaaaaatggtaattttg |
10992324 |
T |
|
| Q |
330 |
ttacaagttataattaaaagaaagcaaatttaaacttaaaagctgacctgtgtttactagagcc |
393 |
Q |
| |
|
||| |||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
10992323 |
gcacaggttagaattaaaataaagcaaatttaaactcaaaagctgacctgtgttgactagagcc |
10992260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 358
Target Start/End: Complemental strand, 10991410 - 10991272
Alignment:
| Q |
219 |
atgtaagagtcataaatatggtagactccaccaatcaacaagatgaaaaacaacgatcctaaaattgatcctgcatttatgaaagctaatttaagaaaaa |
318 |
Q |
| |
|
||||||||||| |||||||| |||||| || | | | |||||| ||||||| |||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
10991410 |
atgtaagagtcgtaaatatgatagactgcagcggtgagcaagataaaaaacattgatcctaaaattgaccctgcatttatgaaaaacaatttaa-aaaaa |
10991312 |
T |
|
| Q |
319 |
cgataattttcttacaagttataattaaaagaaagcaaat |
358 |
Q |
| |
|
|| ||||||||||| | ||||||||||| |||| |||| |
|
|
| T |
10991311 |
aaatgattttcttacatgctataattaaaataaagaaaat |
10991272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 9171329 - 9171235
Alignment:
| Q |
66 |
cctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggttggctt |
160 |
Q |
| |
|
||||| ||||||| ||||| ||||||| |||||| ||||| ||| ||||||||||||||||| || || |||| ||| ||||||||||||| |
|
|
| T |
9171329 |
cctttgtaaacagctccatgagctccttcgcctaacttatccttaaatttatttgtgattctctttatgtcagcataggagaatctggttggctt |
9171235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University