View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1364_low_27 (Length: 396)

Name: NF1364_low_27
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1364_low_27
NF1364_low_27
[»] chr3 (5 HSPs)
chr3 (33-396)||(7038431-7038794)
chr3 (109-287)||(39795240-39795418)
chr3 (109-278)||(32490848-32491017)
chr3 (176-251)||(831794-831869)
chr3 (109-214)||(20524861-20524966)
[»] chr4 (8 HSPs)
chr4 (93-240)||(36625521-36625668)
chr4 (110-253)||(33451293-33451436)
chr4 (109-283)||(19181414-19181588)
chr4 (109-216)||(44126011-44126118)
chr4 (105-283)||(45413767-45413945)
chr4 (107-223)||(26635260-26635376)
chr4 (107-214)||(2183304-2183411)
chr4 (165-283)||(42964503-42964621)
[»] chr2 (4 HSPs)
chr2 (49-279)||(6452408-6452637)
chr2 (116-278)||(40054471-40054633)
chr2 (121-288)||(6457533-6457700)
chr2 (120-214)||(7670386-7670480)
[»] chr7 (4 HSPs)
chr7 (111-252)||(39594606-39594747)
chr7 (107-278)||(41482419-41482590)
chr7 (105-195)||(24429718-24429808)
chr7 (120-252)||(23318950-23319082)
[»] chr8 (6 HSPs)
chr8 (181-288)||(12595848-12595955)
chr8 (109-278)||(22573080-22573249)
chr8 (105-278)||(31734261-31734434)
chr8 (109-195)||(556807-556895)
chr8 (109-193)||(9028635-9028719)
chr8 (184-251)||(3346410-3346477)
[»] chr5 (3 HSPs)
chr5 (109-277)||(34731215-34731383)
chr5 (176-277)||(16290786-16290887)
chr5 (177-251)||(7010701-7010775)
[»] chr1 (12 HSPs)
chr1 (105-252)||(9383224-9383371)
chr1 (105-283)||(26793697-26793875)
chr1 (109-203)||(4076347-4076441)
chr1 (110-203)||(19806758-19806851)
chr1 (149-278)||(12855276-12855405)
chr1 (247-288)||(44107845-44107886)
chr1 (166-214)||(20018619-20018667)
chr1 (157-245)||(28883928-28884016)
chr1 (105-195)||(6768290-6768380)
chr1 (153-250)||(30209719-30209816)
chr1 (171-203)||(7904167-7904199)
chr1 (171-203)||(8002742-8002774)
[»] chr6 (3 HSPs)
chr6 (180-277)||(12771941-12772038)
chr6 (109-203)||(8547436-8547530)
chr6 (109-203)||(8573789-8573883)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 33 - 396
Target Start/End: Complemental strand, 7038794 - 7038431
Alignment:
Q  33 gagatgaaggaagagtctggattggaaatcgaaggagggtaaagaaaataacatgcatgctgatgataagcctatgctatcatgttgctaacccaacaaa 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7038794 gagatgaaggaagagtctggattggaaatcgaaggagggtaaagaaaataacatgcatgctgatgataagcctatgctatcatgttgctaacccaacaaa 7038695  T
Q  133 aagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgtaccaaataatggatttaaacagga 232  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7038694 aagtaaggattagaattacaaaagatgaatacgataggattagtaataggtttaatttatcatatcctattagtgtaccaaataatggatttaaatagga 7038595  T
Q  233 taagataattttatcatatcaggtctctctatcatgcgcatcaaacagacctttaatgacatatgtcaaaacaatacaggaggcaaagttaaagaagtta 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7038594 taagataattttatcatatcaggtctctctatcatgcgcatcaaacagacctttaatgacatatgtcaaaacaatacaggaggcaaagttaaagaagtta 7038495  T
Q  333 aggaagatttgaatagactgaaaataaaaggcgtatcattggggctctcagatgcggaggtttt 396  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7038494 aggaagatttgaatagaccgaaaataaaaggcgtatcattggggctctcagatgcggaggtttt 7038431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 109 - 287
Target Start/End: Original strand, 39795240 - 39795418
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgt 208  Q
    ||||||||||||||||||   ||||| |||||||  ||||||||   |||||||| |||| |||| ||||| | ||||||||||||||| ||||| |||     
T  39795240 ctatcatgttgctaacccgttaaaaactaaggatgcgaattacatgggatgaataagatatgattagtaatcgatttaatttatcatattctattggtgc 39795339  T
Q  209 accaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaacagaccttta 287  Q
    |||||| ||   ||||||  |||||| |||| | ||||||||||| ||||||||||| |||||| |||||| |||||||    
T  39795340 accaaacaacatatttaagtaggatatgatagtgttatcatatcatgtctctctatcctgcgcaccaaacaaaccttta 39795418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 278
Target Start/End: Complemental strand, 32491017 - 32490848
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgt 208  Q
    |||||| |||||||||||| | |||| ||||||||| ||| ||||| |||  ||| ||||| ||| | |||||||||   ||||| | || |||| |||     
T  32491017 ctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggatagaattagcaataggtttcgattatcctttcatattggtgc 32490918  T
Q  209 accaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaac 278  Q
    |||||| || ||||||||| || ||| |||| | ||||||||||  |||||| |||| |||||| |||||    
T  32490917 accaaacaaaggatttaaatagaatatgatagtgttatcatatcctgtctctttatcctgcgcaccaaac 32490848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 831869 - 831794
Alignment:
Q  176 taataggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatcatat 251  Q
    ||||||||||| |||||||| | || || ||| | |||| |||| ||||||||| |||||||||||||||||||||    
T  831869 taataggtttagtttatcattttctcttggtgcatcaaacaatgaatttaaacatgataagataattttatcatat 831794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 20524966 - 20524861
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgt 208  Q
    |||||| |||| ||||||| ||||||  |||||||| ||||||||| |||  ||| |||| ||||  |||| ||||||||||||| |||| |||| |||     
T  20524966 ctatcaagttgttaacccaccaaaaatcaaggattaaaattacaaaggatagataggatatgattactaatgggtttaatttatcgtatcatattggtgc 20524867  T
Q  209 accaaa 214  Q
    ||||||    
T  20524866 accaaa 20524861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 36625521 - 36625668
Alignment:
Q  93 tgatgataagcctatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttat 192  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||||||||||    
T  36625521 tgatgataagtctatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggattcgtaataggtttaatttat 36625620  T
Q  193 catatcctattagtgtaccaaataatggatttaaacaggataagataa 240  Q
    ||||||||||||||| |||||| ||   ||||||| |||||| |||||    
T  36625621 catatcctattagtgcaccaaacaacaaatttaaataggatatgataa 36625668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 110 - 253
Target Start/End: Complemental strand, 33451436 - 33451293
Alignment:
Q  110 tatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgta 209  Q
    |||||||||| ||||||| |||||| ||||||||| ||||||||| |||||||| ||||| | | |||||||||||| ||||||||||| |||| ||| |    
T  33451436 tatcatgttgttaacccatcaaaaactaaggattataattacaaaggatgaataggatagaagtagtaataggtttattttatcatatcatattggtgca 33451337  T
Q  210 ccaaataatggatttaaacaggataagataattttatcatatca 253  Q
    ||||| || | ||||||  |||||| |||| |||||||||||||    
T  33451336 ccaaacaacgaatttaagtaggatacgatagttttatcatatca 33451293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 283
Target Start/End: Original strand, 19181414 - 19181588
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgt 208  Q
    ||||| ||||||||| ||| |||||| ||||||  | ||| | ||| ||||| || ||||||||| | |||||||||||||||||||||| | || |||     
T  19181414 ctatcttgttgctaatccaccaaaaactaaggacaaaaataataaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgc 19181513  T
Q  209 accaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaacagacc 283  Q
    |||||| ||| ||||  | ||||||| |||||||||||||||||| |||||||||||||| ||| ||||| ||||    
T  19181514 accaaacaatagattggatcaggataggataattttatcatatcatgtctctctatcatgtgcaccaaacggacc 19181588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 44126118 - 44126011
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgt 208  Q
    |||||| |||||||||||| ||||||  ||| |||||||  ||||||| |||||| ||||||||| | |||| |||||||||||||| |||||||  ||     
T  44126118 ctatcaagttgctaacccatcaaaaacaaagaattagaaaaacaaaaggtgaataggataggattagaaataagtttaatttatcatttcctattgctgc 44126019  T
Q  209 accaaata 216  Q
    ||||||||    
T  44126018 accaaata 44126011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 283
Target Start/End: Original strand, 45413767 - 45413945
Alignment:
Q  105 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctatta 204  Q
    |||||||||| |||||||||||| |||||| ||||||| | ||| ||||| | |  ||| |||||||| || ||||||||||||||||| | |||||||     
T  45413767 tatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctattg 45413866  T
Q  205 gtgtaccaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaacagacc 283  Q
    ||| |||||| ||  |||| || || |||| |||| || |||| ||||  ||||| |||||| | ||| ||||| ||||    
T  45413867 gtgcaccaaacaaccgattgaatcaagatatgatagttctatcctatcctgtctccctatcaagtgcaccaaacggacc 45413945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 26635260 - 26635376
Alignment:
Q  107 tgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagt 206  Q
    |||||||| |||||||||||| |||||| ||||||| ||||| | ||| || || || ||||| ||||| |||||||| ||||||||||||| | || ||    
T  26635260 tgctatcaggttgctaacccaccaaaaactaaggataagaataataaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggt 26635359  T
Q  207 gtaccaaataatggatt 223  Q
    | |||||| || |||||    
T  26635360 gcaccaaaaaacggatt 26635376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 2183411 - 2183304
Alignment:
Q  107 tgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagt 206  Q
    |||||||| |||||||||||| |||||| ||||||| | ||| ||||| | || ||| ||||||||||| |||  |||||||||||| | | ||||| ||    
T  2183411 tgctatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatccttttctattggt 2183312  T
Q  207 gtaccaaa 214  Q
    | ||||||    
T  2183311 gcaccaaa 2183304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 283
Target Start/End: Original strand, 42964503 - 42964621
Alignment:
Q  165 gataggattggtaataggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatcatatcaggtctctctat 264  Q
    ||||||||  ||||| ||||||| ||||| | ||||||| ||| | ||||||  |||||| | ||||||| |||| ||||||||||||  ||||   |||    
T  42964503 gataggataagtaatgggtttaaattatcctttcctattggtgcaacaaataccggatttcagcaggataggatagttttatcatatcctgtctgcttat 42964602  T
Q  265 catgcgcatcaaacagacc 283  Q
    | |||||| ||||||||||    
T  42964603 cctgcgcaccaaacagacc 42964621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 6452637 - 6452408
Alignment:
Q  49 ctggattggaaatcgaaggagggtaaagaaaataacatgcatg-ctgatgataagcctatgctatcatgttgctaacccaacaaaaagtaaggattagaa 147  Q
    ||||||||| |||||||||||| |||||||||||| |  |  | ||| || ||||| |||||||| | ||| ||||||||||||||| ||||||||||||    
T  6452637 ctggattgggaatcgaaggagg-taaagaaaataataatcgcgtctggtggtaagcatatgctataaggtttctaacccaacaaaaactaaggattagaa 6452539  T
Q  148 ttacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatc 247  Q
    |||||||   |||||| |||| |||| |||||||||||||||||||||||| |||| ||| | ||||  |||||||||||  ||||| ||||||||||||    
T  6452538 ttacaaagcgtgaataggataagattagtaataggtttaatttatcatatcttattggtgcatcaaaccatggatttaaattggataggataattttatc 6452439  T
Q  248 atatcaggtctctctatcatgcgcatcaaaca 279  Q
    |||||  ||||| |||||||||||| ||||||    
T  6452438 atatcctgtctc-ctatcatgcgcaccaaaca 6452408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 278
Target Start/End: Original strand, 40054471 - 40054633
Alignment:
Q  116 gttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgtaccaaat 215  Q
    |||||||||||| | |||| ||||||||| ||| ||||| |||  ||| |||||||||   |||||||||| |||||||| | ||||| ||| ||||||     
T  40054471 gttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcattttctattggtgcaccaaac 40054570  T
Q  216 aatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaac 278  Q
    ||  |||||||| ||||||  ||| | ||||||||||| |||||  |||||||||||||||||    
T  40054571 aagagatttaaataggatataatagtgttatcatatcatgtctcgttatcatgcgcatcaaac 40054633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 288
Target Start/End: Complemental strand, 6457700 - 6457533
Alignment:
Q  121 taacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgtaccaaataatgg 220  Q
    ||||||| |||||| ||||||| | ||| ||||| | || ||| |||| |||||| ||| | ||||||||||||| | ||||| ||| |||||| ||  |    
T  6457700 taacccaccaaaaattaaggataaaaataacaaagggtggataagatatgattggaaattgatttaatttatcattttctattggtgcaccaaacaacag 6457601  T
Q  221 atttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaacagacctttaa 288  Q
    ||| || || |||| |||| || |||||||||  |||||||||||||| ||| |||||| ||| ||||    
T  6457600 attgaatcatgatatgatagttctatcatatcctgtctctctatcatgtgcaccaaacatacccttaa 6457533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 7670480 - 7670386
Alignment:
Q  120 ctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgtaccaaa 214  Q
    |||||||| |||||| ||||||| ||||||||||||| | |||| ||||||||| | || ||||| || ||||||| | ||||| ||| ||||||    
T  7670480 ctaacccaccaaaaattaaggataagaattacaaaagctcaataggataggattagaaacaggttaaacttatcattttctattggtgcaccaaa 7670386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 252
Target Start/End: Complemental strand, 39594747 - 39594606
Alignment:
Q  111 atcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgtac 210  Q
    ||||||||||||||||| |||||| ||||||| | ||||||||| |||||||| |||| |||| ||||||||||||||||| |||||| |||| ||| ||    
T  39594747 atcatgttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcac 39594648  T
Q  211 caaataatggatttaaacaggataagataattttatcatatc 252  Q
    |||| || ||||||||  |||||| |||| ||||||||||||    
T  39594647 caaacaacggatttaagtaggatatgatagttttatcatatc 39594606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 278
Target Start/End: Original strand, 41482419 - 41482590
Alignment:
Q  107 tgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagt 206  Q
    |||||||| |||||||||||| |||||| ||||||| | ||| ||||| | ||| || |||| ||||   ||||||||||| ||||| | |||| || ||    
T  41482419 tgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggt 41482518  T
Q  207 gtaccaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaac 278  Q
    | |||||| |  | ||| || ||||| | |||| ||||||| ||||| ||||  |||||||| ||| |||||    
T  41482519 gcaccaaacagcgcattaaatcaggagatgatagttttatcctatcatgtcttcctatcatgtgcaccaaac 41482590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 24429808 - 24429718
Alignment:
Q  105 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcat 195  Q
    |||||||||| |||||||||||| |||||| ||||||| | ||| ||||| | ||| || |||||||||   ||||| ||||| |||||||    
T  24429808 tatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaattatcat 24429718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 23318950 - 23319082
Alignment:
Q  120 ctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgtaccaaataatg 219  Q
    |||||||| ||||||  |||||| | ||||||||| | | |||| |||||||||   ||||||||||| ||||| | || | || ||| |||||| ||      
T  23318950 ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaaca 23319049  T
Q  220 gatttaaacaggataagataattttatcatatc 252  Q
    ||||||| ||||||| |||| | ||||||||||    
T  23319050 gatttaatcaggatatgatagtgttatcatatc 23319082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 288
Target Start/End: Original strand, 12595848 - 12595955
Alignment:
Q  181 ggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaacag 280  Q
    |||||| ||||||||||| ||||| || |||||| ||  ||||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||||| |    
T  12595848 ggtttagtttatcatatcatattactgcaccaaacaaaagatttaaacaggataggataattttatcatatcatgtctctctatcttgcgcaccaaacgg 12595947  T
Q  281 acctttaa 288  Q
    ||||||||    
T  12595948 acctttaa 12595955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 109 - 278
Target Start/End: Complemental strand, 22573249 - 22573080
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgt 208  Q
    ||||||||||| ||||||| |||||| ||||||| ||||||||||| | | |||| ||||||||| | || ||||| || ||||||| |||| || |||     
T  22573249 ctatcatgttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttcctgttggtgc 22573150  T
Q  209 accaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaac 278  Q
    |||||| || ||||| |  ||||||| |||| | | ||||||||| |||||  ||||||||||| |||||    
T  22573149 accaaacaacggattgagtcaggataggatattctaatcatatcatgtctccttatcatgcgcaccaaac 22573080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 278
Target Start/End: Complemental strand, 31734434 - 31734261
Alignment:
Q  105 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctatta 204  Q
    |||| |||||||||| ||| ||| |||||| ||||||| | ||| ||||| | || ||  |||| |||||| ||||||||||||||||||| || ||||     
T  31734434 tatgttatcatgttgttaatccaccaaaaactaaggataaaaataacaaagggtggatgggataagattggaaataggtttaatttatcatttcttattg 31734335  T
Q  205 gtgtaccaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaac 278  Q
    ||| |||||| || ||||| || ||||||| || | |  |||||||||| |||||||||||||| ||| |||||    
T  31734334 gtgcaccaaacaacggattaaagcaggataggaaagtcctatcatatcatgtctctctatcatgtgcaccaaac 31734261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 195
Target Start/End: Complemental strand, 556895 - 556807
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagt--aaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcat 195  Q
    ||||||||||||||||||| ||||||    |||||||||||  ||||| | |||||| |||| |||| | |||||||||||||||||||    
T  556895 ctatcatgttgctaacccaccaaaaaaacaaaggattagaaaaacaaagggtgaataggatatgattagaaataggtttaatttatcat 556807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 9028635 - 9028719
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatc 193  Q
    |||||| |||||||||||| ||||||  |||||| ||||||||||| | | |||| |||||||||   ||||||||||| |||||    
T  9028635 ctatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatc 9028719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 3346477 - 3346410
Alignment:
Q  184 ttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatcatat 251  Q
    |||||||||| | | ||||||||| |||||| |||| ||||||  |||||| ||||||||||||||||    
T  3346477 ttaatttatctttttctattagtgcaccaaacaatgaatttaattaggataggataattttatcatat 3346410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 109 - 277
Target Start/End: Complemental strand, 34731383 - 34731215
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgt 208  Q
    |||||| |||||||||||| | |||| ||||||||| ||| ||||| |||  ||| |||||||||   |||||||||| |||||| | ||||||| |||     
T  34731383 ctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctattggtgc 34731284  T
Q  209 accaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaa 277  Q
    |||||| || ||||||||| |||||| |||| | ||||||||||   ||||| ||||||||||| ||||    
T  34731283 accaaacaagggatttaaataggatatgatagtgttatcatatcctatctctttatcatgcgcaccaaa 34731215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 16290786 - 16290887
Alignment:
Q  176 taataggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatca 275  Q
    ||||| ||||| |||||| | ||||||  | | |||||| || ||||||||||||||||||||||||||||||||||  |||||| |||| |||||| ||    
T  16290786 taatatgtttattttatcctttcctatgggagcaccaaacaaaggatttaaacaggataagataattttatcatatcctgtctctttatcctgcgcacca 16290885  T
Q  276 aa 277  Q
    ||    
T  16290886 aa 16290887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 7010701 - 7010775
Alignment:
Q  177 aataggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatcatat 251  Q
    |||||| ||| ||||||||||| |||||||| |||||||||  |||||||  |||||| ||||||||||||||||    
T  7010701 aataggattattttatcatatcttattagtgcaccaaataagagatttaagtaggatatgataattttatcatat 7010775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 9383224 - 9383371
Alignment:
Q  105 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctatta 204  Q
    |||||||||| |||||||||||| |||||| ||||||| | ||| ||||| | ||| || |||| |||| | ||| |||||||||||||   |||||||     
T  9383224 tatgctatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaattggtttaatttatccgttcctattg 9383323  T
Q  205 gtgtaccaaataatggatttaaacaggataagataattttatcatatc 252  Q
    ||| |||||| ||||||||||| ||||||  |||| ||||||||||||    
T  9383324 gtgcaccaaacaatggatttaatcaggatgtgatagttttatcatatc 9383371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 283
Target Start/End: Complemental strand, 26793875 - 26793697
Alignment:
Q  105 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctatta 204  Q
    |||||||||| |||||||||||| |||||| |||| || | ||| ||||| | ||| || ||||||||| | |||| |||||| ||||| | | |||||     
T  26793875 tatgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctattg 26793776  T
Q  205 gtgtaccaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaacagacc 283  Q
    ||| |||||| || ||||| || ||||||| |||| || |||||||||| ||||   ||||||| ||| ||||||||||    
T  26793775 gtgcaccaaacaacggattgaatcaggatatgatagttctatcatatcatgtcttcttatcatgtgcaccaaacagacc 26793697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 4076347 - 4076441
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctatt 203  Q
    |||||| ||| |||| ||| |||||| ||||||||||||  |||||   |||||| ||||||||| ||||||||||||||||||| | |||||||    
T  4076347 ctatcaggttcctaatccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagtaataggtttaatttatcctttcctatt 4076441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 19806758 - 19806851
Alignment:
Q  110 tatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctatt 203  Q
    ||||| |||| ||||||| |||||| ||||||||||||  |||||   |||||| ||||||||| | ||||||||||||||||| | |||||||    
T  19806758 tatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatcctttcctatt 19806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 12855276 - 12855405
Alignment:
Q  149 tacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatca 248  Q
    |||||| |||||||| |||| |||  |||||||||||  | |||| | ||||||| ||| | |||| |||||||||||| |||||| ||||||  |||||    
T  12855276 tacaaaggatgaataggatatgataagtaataggtttggtgtatcctttcctattggtgcatcaaacaatggatttaaataggatatgataatgatatca 12855375  T
Q  249 tatcaggtctctctatcatgcgcatcaaac 278  Q
    ||||  |||||  ||||||| ||| |||||    
T  12855376 tatcctgtctccttatcatgtgcaccaaac 12855405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 44107886 - 44107845
Alignment:
Q  247 catatcaggtctctctatcatgcgcatcaaacagacctttaa 288  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  44107886 catatcatgtctctctatcatgtgcatcaaacagacctttaa 44107845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 20018667 - 20018619
Alignment:
Q  166 ataggattggtaataggtttaatttatcatatcctattagtgtaccaaa 214  Q
    |||||||| |||||||||||||||||||||||| | || ||||||||||    
T  20018667 ataggattagtaataggtttaatttatcatatcatgttggtgtaccaaa 20018619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 28883928 - 28884016
Alignment:
Q  157 atgaatacgataggattggtaataggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataatttta 245  Q
    ||||||| ||||||||| | || | |||||||||||| ||| ||||| ||| |||||| | |||||| || || |||||||||||||||    
T  28883928 atgaataagataggattaggaaaaagtttaatttatcctatactattggtgcaccaaacagtggattgaatcaagataagataatttta 28884016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 195
Target Start/End: Complemental strand, 6768380 - 6768290
Alignment:
Q  105 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcat 195  Q
    |||||||||| ||| |||||||| |||||| ||||||| | ||| ||||| | || |||  ||||||| || |||| ||||||||||||||    
T  6768380 tatgctatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggataggaaataagtttaatttatcat 6768290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 30209816 - 30209719
Alignment:
Q  153 aaagatgaatacgataggattggtaataggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatcata 250  Q
    |||| |||||| ||||||||  |||||  | ||| |||||||| | ||||| |||||||||| ||  |||||||  |||||| |||||||||||||||    
T  30209816 aaaggtgaataggataggataagtaatgagattattttatcattttctattggtgtaccaaacaacagatttaagtaggatatgataattttatcata 30209719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 7904199 - 7904167
Alignment:
Q  171 attggtaataggtttaatttatcatatcctatt 203  Q
    |||| ||||||||||||||||||||||||||||    
T  7904199 attgataataggtttaatttatcatatcctatt 7904167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 8002742 - 8002774
Alignment:
Q  171 attggtaataggtttaatttatcatatcctatt 203  Q
    |||| ||||||||||||||||||||||||||||    
T  8002742 attgataataggtttaatttatcatatcctatt 8002774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 277
Target Start/End: Original strand, 12771941 - 12772038
Alignment:
Q  180 aggtttaatttatcatatcctattagtgtaccaaataatggatttaaacaggataagataattttatcatatcaggtctctctatcatgcgcatcaaa 277  Q
    |||||| |||| ||||||| ||||  || |||||| || ||||||||| | |||||||||   ||||||||||| |||||||||||||||||| ||||    
T  12771941 aggtttgatttctcatatcatattgctgcaccaaacaaaggatttaaatacgataagatagagttatcatatcatgtctctctatcatgcgcaccaaa 12772038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 8547436 - 8547530
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctatt 203  Q
    ||||||||||||||||||| |||||| |||| || | ||| ||||| | |||||| |||| |||| | ||||||||||| ||||| | |||||||    
T  8547436 ctatcatgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcctttcctatt 8547530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 8573789 - 8573883
Alignment:
Q  109 ctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattggtaataggtttaatttatcatatcctatt 203  Q
    ||||| ||||||||||||| |||||| |||| || | ||| ||||| | |||||| |||| |||| | ||||||||||| ||||||| |||||||    
T  8573789 ctatcttgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcatttcctatt 8573883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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