View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1364_low_31 (Length: 384)

Name: NF1364_low_31
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1364_low_31
NF1364_low_31
[»] chr1 (9 HSPs)
chr1 (73-369)||(13765312-13765604)
chr1 (167-366)||(13775931-13776126)
chr1 (30-76)||(13765653-13765699)
chr1 (74-116)||(39785225-39785267)
chr1 (75-116)||(15393364-15393405)
chr1 (73-129)||(14760081-14760136)
chr1 (73-116)||(22679534-22679577)
chr1 (73-116)||(32800332-32800375)
chr1 (73-116)||(16706543-16706589)
[»] chr8 (9 HSPs)
chr8 (75-116)||(6906269-6906310)
chr8 (73-116)||(31212492-31212535)
chr8 (73-116)||(6906481-6906524)
chr8 (73-116)||(9861573-9861616)
chr8 (73-116)||(31212318-31212361)
chr8 (73-116)||(5879880-5879923)
chr8 (73-116)||(15229621-15229664)
chr8 (73-116)||(33892041-33892084)
chr8 (73-115)||(14148402-14148444)
[»] chr4 (5 HSPs)
chr4 (73-130)||(54164674-54164730)
chr4 (73-116)||(32185286-32185329)
chr4 (73-116)||(13552870-13552913)
chr4 (73-116)||(54164471-54164514)
chr4 (73-109)||(17430725-17430761)
[»] chr7 (13 HSPs)
chr7 (73-116)||(7760805-7760848)
chr7 (73-116)||(19105462-19105505)
chr7 (73-116)||(3555370-3555413)
chr7 (73-116)||(6036553-6036596)
chr7 (73-116)||(29635240-29635283)
chr7 (73-116)||(31198505-31198548)
chr7 (73-116)||(9686493-9686536)
chr7 (73-116)||(12821184-12821227)
chr7 (73-108)||(15329870-15329905)
chr7 (73-116)||(20164624-20164667)
chr7 (77-116)||(21657511-21657550)
chr7 (73-116)||(31198304-31198346)
chr7 (73-118)||(18881115-18881162)
[»] chr6 (6 HSPs)
chr6 (73-116)||(12289985-12290028)
chr6 (73-116)||(13340448-13340491)
chr6 (73-116)||(34637430-34637473)
chr6 (73-116)||(34637632-34637675)
chr6 (73-116)||(7359627-7359670)
chr6 (73-116)||(31298932-31298975)
[»] chr2 (13 HSPs)
chr2 (73-132)||(18509487-18509545)
chr2 (73-116)||(27847862-27847905)
chr2 (73-116)||(981124-981167)
chr2 (73-116)||(16127923-16127966)
chr2 (73-116)||(25330565-25330608)
chr2 (73-116)||(32945617-32945660)
chr2 (73-116)||(7328505-7328548)
chr2 (73-116)||(16126225-16126268)
chr2 (73-116)||(16192621-16192664)
chr2 (73-116)||(16333357-16333400)
chr2 (74-116)||(12874685-12874727)
chr2 (47-76)||(25330684-25330713)
chr2 (73-110)||(35926736-35926772)
[»] chr5 (9 HSPs)
chr5 (73-116)||(2846578-2846621)
chr5 (73-116)||(2858415-2858458)
chr5 (73-116)||(22297767-22297810)
chr5 (73-116)||(22297970-22298013)
chr5 (73-116)||(29673296-29673339)
chr5 (73-121)||(29673746-29673794)
chr5 (73-116)||(2344672-2344715)
chr5 (73-116)||(25906165-25906208)
chr5 (78-108)||(11929301-11929331)
[»] chr3 (12 HSPs)
chr3 (73-116)||(4304355-4304398)
chr3 (73-116)||(4475110-4475153)
chr3 (73-116)||(30172076-30172119)
chr3 (73-116)||(30430275-30430318)
chr3 (76-116)||(2928099-2928139)
chr3 (217-260)||(2413427-2413470)
chr3 (73-116)||(4304148-4304191)
chr3 (73-116)||(6931148-6931191)
chr3 (73-116)||(19279905-19279948)
chr3 (73-112)||(27614023-27614062)
chr3 (75-116)||(28725283-28725324)
chr3 (73-116)||(28725718-28725764)
[»] scaffold0025 (1 HSPs)
scaffold0025 (73-116)||(64033-64076)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 73 - 369
Target Start/End: Complemental strand, 13765604 - 13765312
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattttaacccgatatattattagacaaattataactttcttatatgtgtttaggttgacc 172  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13765604 taaaatcaaatgttggtatatttagggagattatttacttattttaaccctatatattattagacaaattataactttcttatatgtgtttaggttgacc 13765505  T
Q  173 tagtgggtggatactatgatgctggagacaatttgaagttaggatttccaatggcatttaccataacaatgctatcatggagcacaatagagtgagttca 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||    
T  13765504 tagtgggtggatactatgatgctggagacaatttgaagttaggatttccaatggcatttaccataacaatgctatcatggagcacaata----gagttca 13765409  T
Q  273 aggacaaacttgaaaaaaccaatgagtataaaaatgcattatcagccataaaatggggagcagattacttgatgaaggcacatccacaaccaaacat 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13765408 aggacaaacttgaaaaaaccaatgagtataaaaatgcattatcagccataaaatggggagcagattacttgatgaaggcacatccacaaccaaacat 13765312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 167 - 366
Target Start/End: Complemental strand, 13776126 - 13775931
Alignment:
Q  167 ttgacctagtgggtggatactatgatgctggagacaatttgaagttaggatttccaatggcatttaccataacaatgctatcatggagcacaatagagtg 266  Q
    |||||||||| || ||||| |||||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||||||||||||||||||||||     
T  13776126 ttgacctagttggaggatattatgatgctggagacaatttgaagctaggttttccaatggcatttacaacaacaatgctatcatggagcacaatagagt- 13776028  T
Q  267 agttcaaggacaaacttgaaaaaaccaatgagtataaaaatgcattatcagccataaaatggggagcagattacttgatgaaggcacatccacaaccaaa 366  Q
       | || ||| |||||| |||||  ||||||  || |||||||||| ||||||||||||||||| |||| ||||||||||| ||||||| |||||||||    
T  13776027 ---ttaaagaccaacttggaaaaaagaatgagcttacaaatgcattagcagccataaaatggggaacagactacttgatgaaagcacatcaacaaccaaa 13775931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 13765699 - 13765653
Alignment:
Q  30 aatttttgttgggaaactcaatgtagagcagggactaatttcataaa 76  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  13765699 aatttttgttgggaaactcaatgtagagtagggactaatttcataaa 13765653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 39785267 - 39785225
Alignment:
Q  74 aaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  39785267 aaaattaaatgttggtatttttagggggactatttacttattt 39785225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 15393364 - 15393405
Alignment:
Q  75 aaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  15393364 aaatcaaatgttggtatatttcgggggaccatttacttattt 15393405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 14760081 - 14760136
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattttaacccgatatat 129  Q
    |||||||||||||||||||||||| |||||  ||||||||| |||||||| ||||||    
T  14760081 taaaatcaaatgttggtatatttaaggggatcatttactta-tttaaccctatatat 14760136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 22679534 - 22679577
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||||||||   |||||||||||    
T  22679534 taaaatcaaatgttggtatatttagggggatcgtttacttattt 22679577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 32800332 - 32800375
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||    
T  32800332 taaaatcaaatattgatatatttagtgggactatttacttattt 32800375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 16706543 - 16706589
Alignment:
Q  73 taaaatcaaatgttggt---atatttagggggactatttacttattt 116  Q
    |||||||||||||||||   ||||||||||||||||||||| |||||    
T  16706543 taaaatcaaatgttggtggtatatttagggggactatttacatattt 16706589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 6906310 - 6906269
Alignment:
Q  75 aaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6906310 aaatcaaatgttggtatatttagggggactatttacttattt 6906269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 31212492 - 31212535
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  31212492 taaaatcaaatgttggtatatttagggagactatttacttattt 31212535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 6906481 - 6906524
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  6906481 taaaatcaaatgttggtatatttagggggaccgtttacttattt 6906524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 9861616 - 9861573
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  9861616 taaaatcaaatgttgatatatttaggaggactatttacttattt 9861573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 31212361 - 31212318
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  31212361 taaaatcaaatgttgatatatttaaggggactatttacttattt 31212318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 5879923 - 5879880
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||| || |||||||||||| ||||||||||||||||    
T  5879923 taaaatcaaatattagtatatttagggagactatttacttattt 5879880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 15229664 - 15229621
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||    
T  15229664 taaaataaaatgttggtatatttaagggaactatttacttattt 15229621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 33892084 - 33892041
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||| | | |||||||||||||||    
T  33892084 taaaatcaaatgttggtatatttaagagaactatttacttattt 33892041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 14148444 - 14148402
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttatt 115  Q
    ||||||||||||||| ||||||||||||||| | |||||||||    
T  14148444 taaaatcaaatgttgatatatttagggggaccacttacttatt 14148402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 54164674 - 54164730
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattttaacccgatatatt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  54164674 taaaatcaaatgttggtatatttagggagactatttactta-tttaaccctatatatt 54164730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 32185329 - 32185286
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  32185329 taaaatcaaatgttggtatatttagagggactatttactcattt 32185286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 13552870 - 13552913
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||    
T  13552870 taaaatcaaatattgatatatttaggaggactatttacttattt 13552913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 54164514 - 54164471
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||||   ||||||||||||||||    
T  54164514 taaaatcaaatgttggtatatttagaacgactatttacttattt 54164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 17430761 - 17430725
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactattta 109  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  17430761 taaaatcaaatgttggtatatttagagggacaattta 17430725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 7760805 - 7760848
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  7760805 taaaatcaaatgttggtatatttaggggaactatttacttattt 7760848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 19105462 - 19105505
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  19105462 taaaatcaaaagttggtatatttagggggactatttacttattt 19105505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 3555413 - 3555370
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||||||||| |||| |||||||    
T  3555413 taaaatcaaatgttggtatatttagggggaccatttgcttattt 3555370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 6036596 - 6036553
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| |||||||||||| |||||||||||||||    
T  6036596 taaaatcaaatgttgatatatttaggggaactatttacttattt 6036553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 29635283 - 29635240
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  29635283 taaaatcaaatgttgatatatttagggggaccatttacttattt 29635240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 31198505 - 31198548
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||  ||||||||||||||||||    
T  31198505 taaaatcaaatgttggtatatttaaagggactatttacttattt 31198548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 9686493 - 9686536
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||    
T  9686493 taaaatcaaatattgatatatttaggaggactatttacttattt 9686536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 12821227 - 12821184
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||    
T  12821227 taaaatcaaacgttggtatatttaaggggaccatttacttattt 12821184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 15329905 - 15329870
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactattt 108  Q
    |||||||||||||||||||||||| |||||||||||    
T  15329905 taaaatcaaatgttggtatatttaaggggactattt 15329870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 20164667 - 20164624
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||  |||||| ||||||||||||    
T  20164667 taaaatcaaatgttggtatattttaggggaccatttacttattt 20164624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 21657511 - 21657550
Alignment:
Q  77 atcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  21657511 atcaaatgttagtatatttagggagactatttacttattt 21657550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 31198346 - 31198304
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  31198346 taaaatcaaatgttggtatattta-gggaactatttacttattt 31198304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 18881162 - 18881115
Alignment:
Q  73 taaaatcaaatgttggt--atatttagggggactatttacttatttta 118  Q
    |||||||||||||||||  ||||||| |||||||||| ||||||||||    
T  18881162 taaaatcaaatgttggtatatatttatggggactattcacttatttta 18881115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 12290028 - 12289985
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  12290028 taaaatcaaatgttggtatatttagggagactatttacttattt 12289985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 13340491 - 13340448
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  13340491 taaaatcaaatgttggtatatttaaggggactatttacttattt 13340448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 34637473 - 34637430
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  34637473 taaaatcaaatgttggtatatttatggagactatttacttattt 34637430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 34637632 - 34637675
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||    
T  34637632 taaaatcaaatgttgatatatttagggtgactatttacttattt 34637675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 7359627 - 7359670
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||    
T  7359627 taaaatcaaatgttggtatatttagggcgacgagttacttattt 7359670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 31298932 - 31298975
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||    
T  31298932 taaaatcaaatattggtatatttaaagggactatttacttattt 31298975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 18509545 - 18509487
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattttaacccgatatattat 132  Q
    ||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||    
T  18509545 taaaatcaaatgttggtatatttagggggaccatttaatta-tttaaccctatatattat 18509487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 27847905 - 27847862
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  27847905 taaaatcaaatgttggtatatttatggggactatttacttattt 27847862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 981124 - 981167
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||| | ||||||||||||||||    
T  981124 taaaatcaaatgttggtatatttagagagactatttacttattt 981167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 16127966 - 16127923
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  16127966 taaaattaaatgttggtatatttaaggggactatttacttattt 16127923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 25330608 - 25330565
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| | ||||||||||||||||||||||||||    
T  25330608 taaaatcaaatgttgatgtatttagggggactatttacttattt 25330565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 32945660 - 32945617
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  32945660 taaaatcaaatgttggtatattttgggggactatttacctattt 32945617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 7328505 - 7328548
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||    
T  7328505 taaagtcaaatgttagtatatttagggagactatttacttattt 7328548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 16126268 - 16126225
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||    
T  16126268 taaaattaaatgttggtatatttaaggggactgtttacttattt 16126225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 16192621 - 16192664
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| |||||||| | |||||||||||||||||    
T  16192621 taaaatcaaatgttgatatatttaagaggactatttacttattt 16192664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 16333357 - 16333400
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||    
T  16333357 taaaattaaatgttggtatatttaaggggactgtttacttattt 16333400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 12874727 - 12874685
Alignment:
Q  74 aaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||||  || ||||||||||||    
T  12874727 aaaatcaaatgttggtatatttagggaaaccatttacttattt 12874685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 76
Target Start/End: Original strand, 25330684 - 25330713
Alignment:
Q  47 tcaatgtagagcagggactaatttcataaa 76  Q
    ||||||||||||||||||||||||||||||    
T  25330684 tcaatgtagagcagggactaatttcataaa 25330713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 35926772 - 35926736
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttac 110  Q
    |||||||||||||||||||||||| |||||||||||||    
T  35926772 taaaatcaaatgttggtatattta-ggggactatttac 35926736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 2846621 - 2846578
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  2846621 taaaatcaaatgttgatatatttagggggaccatttacttattt 2846578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 2858458 - 2858415
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  2858458 taaaatcaaatgttgatatatttagggggaccatttacttattt 2858415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 22297810 - 22297767
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||    
T  22297810 taaaatcaaatgttgatatatttagagggactatttacttattt 22297767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 22297970 - 22298013
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  22297970 taaaatcaaatgttagtatatttagggggaccatttacttattt 22298013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 29673339 - 29673296
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||| |||||| ||||||||||||    
T  29673339 taaaatcaaatgttggtatatttaaggggaccatttacttattt 29673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 29673746 - 29673794
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattttaacc 121  Q
    |||||||||||||| ||||||||||||| || |||||||||||| ||||    
T  29673746 taaaatcaaatgtttgtatatttaggggaaccatttacttatttaaacc 29673794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 2344672 - 2344715
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||| |||||||||| |||||||| |||||||||||||||||    
T  2344672 taaaataaaatgttggtctatttaggaggactatttacttattt 2344715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 25906165 - 25906208
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||    
T  25906165 taaaatcaaatgttgatatatttaggaggattatttacttattt 25906208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 108
Target Start/End: Complemental strand, 11929331 - 11929301
Alignment:
Q  78 tcaaatgttggtatatttagggggactattt 108  Q
    |||||||||||||||||||||||||||||||    
T  11929331 tcaaatgttggtatatttagggggactattt 11929301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 4304355 - 4304398
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||||| || |||||||||||||    
T  4304355 taaaatcaaatgttggtatatttagggagattatttacttattt 4304398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 4475153 - 4475110
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  4475153 taaaatcaaatgttggtatatttaggaggactttttacttattt 4475110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 30172119 - 30172076
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  30172119 taaaatcaaatgttgatatatttagggggaccatttacttattt 30172076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 30430318 - 30430275
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  30430318 taaaatcaaatgttggtatatttagagggaccatttacttattt 30430275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 2928139 - 2928099
Alignment:
Q  76 aatcaaatgttggtatatttagggggactatttacttattt 116  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  2928139 aatcaaatgttggtatatttaggaggaccatttacttattt 2928099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 2413470 - 2413427
Alignment:
Q  217 tttccaatggcatttaccataacaatgctatcatggagcacaat 260  Q
    |||||||||||||| || | ||||||||||||||||||||||||    
T  2413470 tttccaatggcattcacaacaacaatgctatcatggagcacaat 2413427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 4304191 - 4304148
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||    
T  4304191 taaaatcaaatgttggtatatttaaggggacgatttatttattt 4304148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 6931148 - 6931191
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||| ||||||||| | |||||||||||||||||    
T  6931148 taaaatcaaatgttagtatatttaagaggactatttacttattt 6931191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 19279948 - 19279905
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  19279948 taaaatcaaatgttggtatacttaggggaactacttacttattt 19279905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 27614062 - 27614023
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttactt 112  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  27614062 taaaattaaatgttggtatatttaggggaactatttactt 27614023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 28725324 - 28725283
Alignment:
Q  75 aaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||| ||||||||||||||||| || ||||||||||||||||    
T  28725324 aaattaaatgttggtatatttatggtgactatttacttattt 28725283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 28725718 - 28725764
Alignment:
Q  73 taaaatcaaatgttggtat---atttagggggactatttacttattt 116  Q
    |||||||||||||||||||   |||||||||||| ||||||||||||    
T  28725718 taaaatcaaatgttggtattatatttagggggaccatttacttattt 28725764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 64033 - 64076
Alignment:
Q  73 taaaatcaaatgttggtatatttagggggactatttacttattt 116  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||    
T  64033 taaaattaaatgttggtatatttagggagactatttactgattt 64076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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