View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_33 (Length: 376)
Name: NF1364_low_33
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 38 - 366
Target Start/End: Original strand, 38358699 - 38359027
Alignment:
| Q |
38 |
gaaactaaagcttatacatggatccagagactttaatattccttcttagatcatgtatattgatgacatgaagattttctgcaaaggaaccaactccaac |
137 |
Q |
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| T |
38358699 |
gaaactaaagcttatacatggatccagagactttaatattccttcttatatcatgtatattgatgacatgaagattttctgcaaaggaaacaactccaac |
38358798 |
T |
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| Q |
138 |
atttcgactctcaagaaagtttttctcagctatgctgaagtttctggccaacttgttaaacctaaaaaatcttatatatttgcatgttctatcactaatc |
237 |
Q |
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| T |
38358799 |
atctcgattctcaagaaagtttttctcaactatggtgaagtttctggccaacttgttaaacctaaaaaatcttatatatttgcatgttctatcagtaatc |
38358898 |
T |
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| Q |
238 |
atagattgactcaattggctaatgatcttggttttaacattggctttcttctatttacttatcttagagttccaattttcaaaggcaagcccaaatatgt |
337 |
Q |
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| T |
38358899 |
atagattgattcaattggctaatgatcttggttttaacattggctttcttccatttacttatcttggagttccaattttcaaaggcaagcccaaatatgt |
38358998 |
T |
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| Q |
338 |
caacctattgctgataaaatcaagaataa |
366 |
Q |
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| T |
38358999 |
caacctattgctgataaaatcaagaataa |
38359027 |
T |
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