View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_46 (Length: 296)
Name: NF1364_low_46
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 112 - 265
Target Start/End: Original strand, 32358987 - 32359134
Alignment:
| Q |
112 |
tgtgcaattgtaacaagctgctgcaaatttcattaaccctatacagctgaatataagcaagctttcatctttttattcaagttgtataactagaagctta |
211 |
Q |
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| T |
32358987 |
tgtgcaattgtaacaagctgctgcaaatttcattaaccctattcagctgaatat----aagctttcatctttttattcaagttgtataactagaagctta |
32359082 |
T |
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| Q |
212 |
atgctctgattgtatgataaactagtcatttgttggattttcaattattgctct |
265 |
Q |
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| T |
32359083 |
atg--ctgattgtatgataaactagtcatttgttgaattttcaattactgctct |
32359134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 32372465 - 32372509
Alignment:
| Q |
72 |
gaaagattgcacagatgtatgaaggttgtcaattcatttatgtgc |
116 |
Q |
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| T |
32372465 |
gaaagattgcacagatgtatgaaggttgtcaactcatttttgtgc |
32372509 |
T |
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