View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_48 (Length: 292)
Name: NF1364_low_48
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 35241031 - 35241175
Alignment:
| Q |
113 |
gtgtgtgaaaggaaagagacaaaatccatcataattaattgttcttgtttttagccattgatctatcattaaaagaaatggacggctcaaattgcttcac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||| |||||||||| |
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| T |
35241031 |
gtgtgtgaaaggaaagagacaaaatccatcataattatttgttcttgtttttagccgttgatctatcattcaaagaaatggagggctcagattgcttcac |
35241130 |
T |
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| Q |
213 |
aggagaaaacaggagaaaattggactggagacaatccattcccct |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35241131 |
aggagaaaacaggagaaaattggactggagacaatccattcccct |
35241175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 35240921 - 35241012
Alignment:
| Q |
30 |
gaaataagagggagaaatagtgaaggatgaaggaaggacgtcaccgttggtgcaccgcggaacaaacttcaatggcagaaacggtgtgtgaa |
121 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35240921 |
gaaataagagggagaaatattgaaggatgaaggaaggacgtcaccgttggtgcaccgcggaacaaacttcaatggcagaaacggtttgtgaa |
35241012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 35240430 - 35240358
Alignment:
| Q |
183 |
aaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc |
255 |
Q |
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| T |
35240430 |
aaaagaaatggaaggctcagattgcttcacaggagaaaacaggagaaaatttgactggagacaatcctttccc |
35240358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 31121210 - 31121265
Alignment:
| Q |
178 |
tcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaatt |
233 |
Q |
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|||||||||||||||||||||| | |||| ||||||||||||||| |||| ||||| |
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| T |
31121210 |
tcattaaaagaaatggacggctaagattgattcacaggagaaaactggaggaaatt |
31121265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 14111497 - 14111588
Alignment:
| Q |
30 |
gaaataagagggagaaatagtgaaggatgaaggaaggacgtcaccgttggtgcaccgcggaacaaacttcaatggcagaaacggtgtgtgaa |
121 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14111497 |
gaaataagagggagaaataatgaaggatgaaggaaggacgtcaccgttggtgcaccgcggaacaaacttcaatggcagaaacggtttgtgaa |
14111588 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 14112521 - 14112594
Alignment:
| Q |
182 |
taaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc |
255 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14112521 |
taaaagaaatggagggctcagattgcttcacaggagaaaacatgagaaaattggactggagacaatccattccc |
14112594 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 14111607 - 14111644
Alignment:
| Q |
113 |
gtgtgtgaaaggaaagagacaaaatccatcataattaa |
150 |
Q |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
14111607 |
gtgtgtgaaaggaaagagacaaaatccattataattaa |
14111644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 1962077 - 1961987
Alignment:
| Q |
165 |
agccattgatctatcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc |
255 |
Q |
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|||| ||||||| ||||||||| |||||| |||| |||||| ||||||||||||| ||||||| || ||||||||||||||||||||| |
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| T |
1962077 |
agccgttgatctgccattaaaaggaatggagggctatgattgctccacaggagaaaactggagaaattttgactggagacaatccattccc |
1961987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 1962559 - 1962649
Alignment:
| Q |
165 |
agccattgatctatcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc |
255 |
Q |
| |
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|||| ||||||| ||||||||| |||| | |||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
1962559 |
agccgttgatcttccattaaaaggaatgaagggctgtgattgctccacaggagaaaacaggagaaattttgactggagacaatccattccc |
1962649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 25506289 - 25506234
Alignment:
| Q |
178 |
tcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaatt |
233 |
Q |
| |
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|||||||||||||||||||||| | |||| ||||||||||||||| |||| ||||| |
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| T |
25506289 |
tcattaaaagaaatggacggctaagattgattcacaggagaaaactggaggaaatt |
25506234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 44087962 - 44087921
Alignment:
| Q |
215 |
gagaaaacaggagaaaattggactggagacaatccattcccc |
256 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44087962 |
gagaaaacaggaggaaattggactggagacaatccattcccc |
44087921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 40396862 - 40396917
Alignment:
| Q |
178 |
tcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaatt |
233 |
Q |
| |
|
|||||||||| |||||| |||| | ||| |||||||||||||||||||||||||| |
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| T |
40396862 |
tcattaaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaatt |
40396917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 36071944 - 36071999
Alignment:
| Q |
178 |
tcattaaaagaaatggacggctcaaattgcttcacaggagaaaacaggagaaaatt |
233 |
Q |
| |
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||||||||| |||||| |||||||||||||||||| |||||||| |||| ||||| |
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| T |
36071944 |
tcattaaaaagaatggagggctcaaattgcttcacacgagaaaactggaggaaatt |
36071999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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