View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_5 (Length: 677)
Name: NF1364_low_5
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 29 - 281
Target Start/End: Complemental strand, 53175417 - 53175165
Alignment:
| Q |
29 |
aacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggctcttctcatttaccaaacgtggtttaggggaaccag |
128 |
Q |
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| T |
53175417 |
aacagagtactctgtttgatattcattgtgatgaggtatataagaacaggcagcttcaagaggctcttctcatttaccaaacgtggtttaggggaaccag |
53175318 |
T |
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| Q |
129 |
ttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaacttgtcaaagaccaacttggaaatgtttctcttatga |
228 |
Q |
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| T |
53175317 |
ttctgagtcccaaaggtgaagaaaatgaaaagagcttgaagattcttccatatgaagaagaaacttgtcaaaaaccaacatggaaatgtttctcttatga |
53175218 |
T |
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| Q |
229 |
agagttgtttgatgctaccaatggcttcaactcaggtgattaagacttgtttg |
281 |
Q |
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| T |
53175217 |
agagttgtttgatgctaccaatggcttcaactcaggtgattaagacttgtttg |
53175165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 360 - 598
Target Start/End: Complemental strand, 53175081 - 53174843
Alignment:
| Q |
360 |
agaaaatatggttggaaaaggtggttatgctgaggtttacaagggaacattgaaaaatggtgaagaaattgctgtgaagagattaacaagagcttcaaag |
459 |
Q |
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| T |
53175081 |
agaaaatatggttggaaaaggtggttatgctgaggtttacaagggaacattgaaaaatggtgaagaaattgctgtgaagagattaacaagagcttcaaag |
53174982 |
T |
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| Q |
460 |
gatgaaagaaaagagaaagagtttttgacagagattggaacaattggtcatgttcgtcattccaatgttttatctcttctaggatgttgtattgacaatg |
559 |
Q |
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| T |
53174981 |
gatgaaagaaaagagaaagagtttttgacagagattggaacaattggtcatgttcgtcattccaatgttttatctcttctaggatgttgtattgacaatg |
53174882 |
T |
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| Q |
560 |
gactttactttgtttttgaactatccaccacaggttctg |
598 |
Q |
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| T |
53174881 |
gactttactttgtttttgaactatccaccactggttctg |
53174843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 654
Target Start/End: Complemental strand, 913263 - 913229
Alignment:
| Q |
620 |
caagaagaaaggcattgatgatagtatataacaac |
654 |
Q |
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| T |
913263 |
caagaagaaaggcattgatgatagtatataacaac |
913229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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