View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_50 (Length: 286)
Name: NF1364_low_50
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_50 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 29 - 286
Target Start/End: Original strand, 8723315 - 8723572
Alignment:
| Q |
29 |
aaaaagccgagataaaaggcgaagaggaaaatgatacaatgatgtgtgatgaaggggagcctagcagacaaatgacaccctcatttcctcccattcttca |
128 |
Q |
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| T |
8723315 |
aaaaagccgagataaaaggcgaagaggaaaatgatacaatgatgtgtgatgaaggggagcctagcagacaaatgacaccctcatttcctcccattcttca |
8723414 |
T |
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| Q |
129 |
ttatgttggattcagattttgtccaacaggtgaagagctagttaaccactaccttagaaataagttgcttggttatgacgccattgtaaacaatgttata |
228 |
Q |
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| T |
8723415 |
ttatgttggattcagattttgtccaacaggtgaagagctagttaatcactaccttagaaataagttgcttggtaatgacgccattgtaaacaatgttata |
8723514 |
T |
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| Q |
229 |
gctgaagttgatattcgcaagttcgaaccatgggaattatcaggtaaatatataaaac |
286 |
Q |
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| T |
8723515 |
gctgaagttgatattcgcaagttcgaaccatgggaattaccaggtaaatatataaaac |
8723572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 29 - 276
Target Start/End: Original strand, 8739965 - 8740216
Alignment:
| Q |
29 |
aaaaagccgagataaaaggcgaagaggaaaatgatacaatgatgtgtgatgaaggggagcctagcagacaaatgacaccctcatttcctcccattcttca |
128 |
Q |
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| T |
8739965 |
aaaatgccgagaaaaaaggtgaagaggaaaattatacaatggtgtgtgatgaaggggagtcttccagacaaatgacaacctcttttcctccaactattga |
8740064 |
T |
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| Q |
129 |
ttatg---ttggattcagattttgtccaacaggtgaagagctagttaa-ccactaccttagaaataagttgcttggttatgacgccattgtaaacaatgt |
224 |
Q |
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| T |
8740065 |
ttttgttcttggacttagattctgtcctacagatgaagagcttgttaatgtactaccttaaaaataagatacctggtaatgattccattgtaaacaatgt |
8740164 |
T |
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| Q |
225 |
tatagctgaagttgatattcgcaagttcgaaccatgggaattatcaggtaaa |
276 |
Q |
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| T |
8740165 |
tatagctgaagttgatgtatgcaagtacgaaccttgggacttaccaggtaaa |
8740216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 275
Target Start/End: Original strand, 8690724 - 8690867
Alignment:
| Q |
132 |
tgttggattcagattttgtccaacaggtgaagagctagttaaccactaccttagaaataagttgcttggttatgacgccattgtaaacaatgttatagct |
231 |
Q |
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| T |
8690724 |
tgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtcaacaatgttatagct |
8690823 |
T |
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| Q |
232 |
gaagttgatattcgcaagttcgaaccatgggaattatcaggtaa |
275 |
Q |
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| T |
8690824 |
gaagttgatgtatgcaagttcgaaccttgggatttaccaggtaa |
8690867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 8704996 - 8705104
Alignment:
| Q |
132 |
tgttggattcagattttgtccaacaggtgaagagctagttaaccactaccttagaaataagttgcttggttatgacgccattgtaaacaatgttatagct |
231 |
Q |
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||||||||||||||| | ||||||| ||||||||| || |||||||| || | ||| ||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
8704996 |
tgttggattcagattccgaccaacagatgaagagcttgtaaaccactatctcaaaaaaaagttacttggtaatgattccattgtaaacaatgttatagct |
8705095 |
T |
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| Q |
232 |
gaagttgat |
240 |
Q |
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| T |
8705096 |
gaagttgat |
8705104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 8691326 - 8691387
Alignment:
| Q |
31 |
aaagccgagataaaaggcgaagaggaaaatgatacaatgatgtgtgatgaaggggagcctag |
92 |
Q |
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||||| |||| ||||| |||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
8691326 |
aaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaaggggagcctag |
8691387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 8722073 - 8722220
Alignment:
| Q |
132 |
tgttggattcagattttgtccaacaggtgaagagctagttaaccactaccttagaaataagttgcttggttatgacgccattgtaaacaatgttatagct |
231 |
Q |
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||||||||||||||| |||||||| | ||||||| || ||| |||| || ||||| ||||| ||||| |||| | |||| |||||||| |||||| |
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| T |
8722073 |
tgttggattcagattccatccaacagatcaagagcttgtaaactactatctcagaaacaagttacttggcaatgaagagtttgttaacaatgtcatagct |
8722172 |
T |
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| Q |
232 |
gaagttgatattcgcaagttcgaaccatgggaattatcaggtaaatat |
279 |
Q |
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| T |
8722173 |
gaagttgatgtattcaagtttaaaccttgggatttaccaggtaaatat |
8722220 |
T |
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