View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1364_low_54 (Length: 279)

Name: NF1364_low_54
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1364_low_54
NF1364_low_54
[»] chr7 (7 HSPs)
chr7 (56-241)||(4630585-4630770)
chr7 (163-223)||(4784105-4784165)
chr7 (163-223)||(4816534-4816594)
chr7 (163-218)||(4712350-4712405)
chr7 (125-217)||(4666659-4666754)
chr7 (171-223)||(4636636-4636688)
chr7 (56-88)||(4666611-4666643)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 56 - 241
Target Start/End: Original strand, 4630585 - 4630770
Alignment:
Q  56 caataacaacaacaaaagctgtggtgatcttaannnnnnnngacgactgggttgaaaattcttgatgccggggagatagaccaatgaattttgaaatttg 155  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630585 caataacaacaacaaaagctgtggtgatcttaattttttttgacgactgggttgaaaattcttgatgccggggagatagaccaatgaattttgaaatttg 4630684  T
Q  156 ccctgcaagattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtctctg 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4630685 ccctgcaagattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctg 4630770  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 4784165 - 4784105
Alignment:
Q  163 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatata 223  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||    
T  4784165 agattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatata 4784105  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 4816594 - 4816534
Alignment:
Q  163 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatata 223  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||    
T  4816594 agattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatata 4816534  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 4712405 - 4712350
Alignment:
Q  163 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacg 218  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | |||||||||    
T  4712405 agattatttttatcacttattttgaaaatctcaattccattcattatgacatcacg 4712350  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 4666659 - 4666754
Alignment:
Q  125 ggggagatagaccaatgaattttgaaatttgccctgcaagatt---agttttatcacttattttgaaaatctcaattccattcagcaggacatcac 217  Q
    ||||||||||| ||||| ||||||| ||| | ||||| |||||   | |||| ||||||||||| |||||||| |||||||| || ||||||||||    
T  4666659 ggggagatagaacaatggattttgatattggtcctgcgagattgttatttttgtcacttatttttaaaatctcgattccattaagaaggacatcac 4666754  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 4636636 - 4636688
Alignment:
Q  171 tttatcacttattttgaaaatctcaattccattcagcaggacatcacgatata 223  Q
    ||||||||| |||||||||||||| |||||||| || |  |||||||||||||    
T  4636636 tttatcactaattttgaaaatctcgattccattaagaataacatcacgatata 4636688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 4666611 - 4666643
Alignment:
Q  56 caataacaacaacaaaagctgtggtgatcttaa 88  Q
    |||| ||||||||||||||||||||||||||||    
T  4666611 caattacaacaacaaaagctgtggtgatcttaa 4666643  T

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