View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_55 (Length: 272)
Name: NF1364_low_55
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 93 - 249
Target Start/End: Complemental strand, 1688312 - 1688154
Alignment:
| Q |
93 |
aacaatgattttataattggtacatccattttaaaaatattttcacacaacaaatgaacttataactagaaattaacacttataa-atatagtcatattt |
191 |
Q |
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| T |
1688312 |
aacaatgatttgacaattggtacatgcattttaaaattattttgacccaacaaaagaacttattactagaaattaacacttaaaagatatagtcatattt |
1688213 |
T |
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| Q |
192 |
aatcaaaaagccattgatatctatgttgagcaaaa-atttactattatgatatcaatga |
249 |
Q |
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| T |
1688212 |
aatcaaaaagccattgatatctattttgagcaaaagatttaatattaggctatcaatga |
1688154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 1688391 - 1688355
Alignment:
| Q |
31 |
actgagcctttccatggtaagaatcgtctatcaccta |
67 |
Q |
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| T |
1688391 |
actgagcctttccatggtaagaatcgtctatcaccta |
1688355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 41918916 - 41918878
Alignment:
| Q |
29 |
aaactgagcctttccatggtaagaatcgtctatcaccta |
67 |
Q |
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| T |
41918916 |
aaactgagcctttccatggtaagaatcgtctatcaccta |
41918878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 41918863 - 41918820
Alignment:
| Q |
65 |
ctaattgcaatcaaaacatttaaaaaacaacaatgattttataa |
108 |
Q |
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| T |
41918863 |
ctaattgtactcaaaacatttaaaaaacaacaatgattttataa |
41918820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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