View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_6 (Length: 658)
Name: NF1364_low_6
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 11843665 - 11843037
Alignment:
| Q |
1 |
tgcgtaggcaatgaagtttcacaacaatatcttccattgcaacggtcattactggaattgaagttgttgttaaagttgctatcatcacaaattgatacgc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
11843665 |
tgcgtaggcaatgaagtttcacaacaatatcttccattgcaacggtcgttactggaattgaagttgttgttaaagttgccatcatcgcaaattgatacgc |
11843566 |
T |
|
| Q |
101 |
aaccaccaaccgttgttccatttgattgtagaaaagcaagattgttacatccaacggctagaaatttgttgtaactctgggaatacacaaaaggactaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11843565 |
aaccaccaaccgttgttccatttgattgtagaaaagcaagattgttacatccaacggctagaaatttgttgtaactctgggaatacataaaaggactaac |
11843466 |
T |
|
| Q |
201 |
tccaaggtttatagtaacggttttattgttaatannnnnnngacagtttgaatgataaattggattcataatctcaaccatgcctaagtccaggtaaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
11843465 |
tccaaggtttatagtaacggttttattgttaatattttgttgacagtttgaatgataaattggattcataatctcaaccatgcctaagtctaggtaaaca |
11843366 |
T |
|
| Q |
301 |
ttatttacctcaagatttaaagacttcaaatatggttttggattttgagaattgttgtctaatttgcactctatttcgaaccacttgtctgcataacaac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11843365 |
ttatttacctcaagatttaaagacttcaaatatggttttggattttgagaactgttgtctaatttgcactctatttcgaaccacttgtctgcataacaac |
11843266 |
T |
|
| Q |
401 |
gaggttctttcattccgaatgggaaagggattgacattgttccgcatgatgaattacaaccttgttgtgctatgattccatcttcttgttgtgctgttgt |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11843265 |
gaggttctttcattccgaatgggaaagggattgacattgttccgcatgttgaattacaaccttgttgtgctatgattccatcttcttgttgtgctgatgt |
11843166 |
T |
|
| Q |
501 |
taatggagaaaatatggggaatattagagctaagatgatatgaaatattgtaaattgcagaatcattgtttagagctaattaagtataactgtaaatttg |
600 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
11843165 |
taatggaggaaatatggggaatattagagctaagatgatatgaaatattgtaaattgcagaatcattgtgtagagctaattaagtttaactgtaaatttg |
11843066 |
T |
|
| Q |
601 |
tttagaggaagtttaattgtggatcttag |
629 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
11843065 |
tttagaggaagtttaattgtggatcttag |
11843037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 5 - 593
Target Start/End: Complemental strand, 11848346 - 11847755
Alignment:
| Q |
5 |
taggcaatgaagtttcacaacaatatcttccattgcaacggtcattactggaattgaagt---tgttgttaaagttgctatcatcacaaattgatacgca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||| || |||| | |||| | ||||| ||||||||||| || |
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|
| T |
11848346 |
taggcaatgaagtttcacaacaatatcttccattacaaccatcactactcaaattgaagtaattgctgtttatgttgttgtcatcgcaaattgatacaca |
11848247 |
T |
|
| Q |
102 |
accaccaaccgttgttccatttgattgtagaaaagcaagattgttacatccaacggctagaaatttgttgtaactctgggaatacacaaaaggactaact |
201 |
Q |
| |
|
|||||||||| | ||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||| | ||||||| || |
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| T |
11848246 |
accaccaaccatgtttccacttgattgtataaaagcaagattgttacatccaacagctagaaatttgttgtaatcctgtgaatatatgaaaggaccgcct |
11848147 |
T |
|
| Q |
202 |
ccaaggtttatagtaacggttttattgttaatannnnnnngacagtttgaatgataaattggattcataatctcaaccatgcctaagtccaggtaaaaat |
301 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11848146 |
ccaaggtttataataacggttttattgttattatattttcgacagtttggacgatgaattggattcataatctcaaccaagcctaagtccaggtaaaaat |
11848047 |
T |
|
| Q |
302 |
tatttacctcaagatttaaagacttcaaatatggttttggattttgagaattgttgtctaatttgcactctatttcgaaccacttgtctgcataacaacg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
11848046 |
tatttacctcaagatttaaagacttcaaatatggttttggattttgagaattgttgtctaatttgcactctatttcaaaccatttgtctgcataacaacg |
11847947 |
T |
|
| Q |
402 |
aggttctttcattccgaatgggaaagggattgacattgttccgcatgatgaattacaaccttgttgtgctatgattccatcttcttgttgtgctgttgtt |
501 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
11847946 |
aggttctttcattccgaatggaaaaggaattgacattgttccgcatgttgaattacaaccttgctgtgctatgattccatcttcttgttgtgctgatgtt |
11847847 |
T |
|
| Q |
502 |
aatggagaaaatatggggaatattagagctaagatgatatgaaatattgtaaattgcagaatcattgtttagagctaattaagtataactgt |
593 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
11847846 |
aatggaggaaatatggggaatattagagctaagatgatatgaaatattgtaaactgcagaatcattgtttagagctaattaagtttaactgt |
11847755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 304 - 434
Target Start/End: Complemental strand, 26885326 - 26885193
Alignment:
| Q |
304 |
tttacctcaagatttaaagacttcaaatatggttttggattttgagaa---ttgttgtctaatttgcactctatttcgaaccacttgtctgcataacaac |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||| | | |||| || ||||| ||||| |||||||||||||||||| || ||||||||||| |
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| T |
26885326 |
tttacctcaagatttaaagactttaaataaggtttaggaatattagaagattttttgtcaaatttacactctatttcgaaccacatgcctgcataacaat |
26885227 |
T |
|
| Q |
401 |
gaggttctttcattccgaatgggaaagggattga |
434 |
Q |
| |
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| ||||||| |||||| ||||| ||||| ||||| |
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|
| T |
26885226 |
gtggttcttccattccaaatggaaaaggaattga |
26885193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 26882558 - 26882478
Alignment:
| Q |
258 |
aattggattcataatctcaaccatgcctaagtccaggtaaaaattatttacctcaagatttaaagacttcaaatatggttt |
338 |
Q |
| |
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|||||| |||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
26882558 |
aattgggttcaaaatctcaatcatgcctaagtaatcgttaaaatgttttacctcaagatttaaagacttcaaataaggttt |
26882478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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