View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_67 (Length: 252)
Name: NF1364_low_67
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_67 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 42383134 - 42382888
Alignment:
| Q |
5 |
attgacttttcaaaaactaaaaattaacatatgtgtgtgttgtgcacatcacttgaaaactaatgcactgtgaatatcgcttgtgaacttggactagact |
104 |
Q |
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| T |
42383134 |
attgacttttcaaaaac--aaaattaacatatgtgtgtgttgtgcacatcacttgaaaactaatgcactgtgaatatcgcttgtgaacttggactagact |
42383037 |
T |
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| Q |
105 |
cgaagataatatcaagtgcctggacaaataaaagta-tatattaataataaaccagtgcaccataaatgtcacatgtggccactaaaacatgaaaaggaa |
203 |
Q |
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| T |
42383036 |
caaagataatatcaagtgcctggacaaataaaagtattatattaataataaaccagtgcaccataaatgtcacatgtggccactaaaacatgaaaaggaa |
42382937 |
T |
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| Q |
204 |
acacaaacagaaacaaatcactttgcaaatcatattgtcgggtcacttc |
252 |
Q |
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| T |
42382936 |
acacaaacagaaacaaatcactttgcaaatcatattgtcgggtcacttc |
42382888 |
T |
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