View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_69 (Length: 252)
Name: NF1364_low_69
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 242
Target Start/End: Original strand, 13396844 - 13397079
Alignment:
| Q |
6 |
acatcaaacttccaagttctgaagcatatggaatcctagcaattaannnnnnnnnctttcttcgtctgaggtgattgttcatgggataggcaaaaatgac |
105 |
Q |
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| T |
13396844 |
acatcaaacttccaagttctgaagcatatggaatcctagccattaatttttttt-ctttctccgtctgaggtgattgttcatgggataggcaaaaatgac |
13396942 |
T |
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| Q |
106 |
ttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttgatgtactctacttgagataactacaaaactcctttttg |
205 |
Q |
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| T |
13396943 |
ttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacgagtgatgtactctacttgagataactacaaaactcctttttg |
13397042 |
T |
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| Q |
206 |
cttatctatcatgatttgcataccaatgattttcttt |
242 |
Q |
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| T |
13397043 |
cttatctatcatgatttgcataccaatgattttcttt |
13397079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 19944575 - 19944401
Alignment:
| Q |
68 |
cgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttg |
167 |
Q |
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| T |
19944575 |
cgtctgaggtgattgttcttgggataggcgaaaatgacttgccaaaggtgtgctaaccagtttggcatcgcccatgttgaatctttgcaaaacacggttg |
19944476 |
T |
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| Q |
168 |
atgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttcttt |
242 |
Q |
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| T |
19944475 |
atgtactccgcttgagataactgcaaaacacctttttgcttatctctcgtgatttgcataccaaggattttcttt |
19944401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 31622651 - 31622739
Alignment:
| Q |
138 |
cccatgttgaatatttgcaaaacacagttgatgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcata |
227 |
Q |
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| T |
31622651 |
cccatgttgaatctt-gcaaaacatggttgatgcactctgcttgagataactgcaaaactcctttatgcctatctcacatgatttgcata |
31622739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 6692625 - 6692451
Alignment:
| Q |
68 |
cgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttg |
167 |
Q |
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| T |
6692625 |
cgtctgaggtgattgttcttgggataggcgaaaatgacttgccaaaggtgtgctaactagtttggcatcgcccatattgaatctttgcaaaacacggttg |
6692526 |
T |
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| Q |
168 |
atgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttcttt |
242 |
Q |
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| T |
6692525 |
atgtactccgcttgagataactgcaaaacacctttttgcttatctctcgtgatttgcataccaaggattttcttt |
6692451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 68 - 242
Target Start/End: Original strand, 796196 - 796370
Alignment:
| Q |
68 |
cgtctgaggtgattgttcatgggataggcaaaaatgacttgccaaagttgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttg |
167 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||| |||||| ||||||||||||| |||||||||||| |||| |
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| T |
796196 |
cgtctgaggtgattgttcttgggataggcgaaaatgacttgccaaaggtgtgctaaccagtttggcatcgcccatgttgaatctttgcaaaacacggttg |
796295 |
T |
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| Q |
168 |
atgtactctacttgagataactacaaaactcctttttgcttatctatcatgatttgcataccaatgattttcttt |
242 |
Q |
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| T |
796296 |
atgtactccgcttaagataactgcaaaacacctttttgcttatctctcgtgatttgcataccaaggattttcttt |
796370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 8273583 - 8273457
Alignment:
| Q |
116 |
tgtgctaacaagtatggcattgcccatgttgaatatttgcaaaacacagttgatgtactctacttgagataactacaaaactcctttttgcttatctatc |
215 |
Q |
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| T |
8273583 |
tgtgctaaccagtttggcatcgcccatgttgaatctttgcaaaacacggttgatgtactccgcttgagataactgcaaaacacctttttgcttatctctc |
8273484 |
T |
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| Q |
216 |
atgatttgcataccaatgattttcttt |
242 |
Q |
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| T |
8273483 |
gtgatttgcataccaaggattttcttt |
8273457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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