View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_70 (Length: 252)
Name: NF1364_low_70
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 27137175 - 27137397
Alignment:
| Q |
11 |
cagagatagattgacttaatggattaaaatgttagaaataagttataattgattttatttggtataccctaaattaggtttaatatgtttattttaaggg |
110 |
Q |
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| T |
27137175 |
cagagatagattgacttaatggattaaaatgttaggaataagttataattgattttatttggtataccctaaattaggtttaatatgtttattttaaggg |
27137274 |
T |
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| Q |
111 |
aaccattaacatgatttcattgccctaannnnnnncttcaaatttacaagattaacaaaatgacttataagctcatattactaaaaaagacctatttaat |
210 |
Q |
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| T |
27137275 |
aaccattaacatgatttcattgccctaatttttttcttcaaatttacaagattaacaaaatgacttataagctcatattactaaaaaagacctattggat |
27137374 |
T |
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| Q |
211 |
aagaataataatattttcccacaa |
234 |
Q |
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| T |
27137375 |
aa-aagaataatattttctcacaa |
27137397 |
T |
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