View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1364_low_72 (Length: 251)
Name: NF1364_low_72
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_72 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 34953350 - 34953129
Alignment:
| Q |
30 |
ctaaatacaaaaagacctaccaacagaagatgaagcaatggcggaaccacaaccaaaggtcttaaagcgagcatcaatgattttcccattctcatcaacc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34953350 |
ctaaatacaaaaagacctaccaacagaagatgaagcaatggcggaaccacaaccaaaggtcttaaagcgagcatcaatgattttcccattctcatcaacc |
34953251 |
T |
|
| Q |
130 |
ttgatttgaagcttcatgacatcaccacaagcgggtgcaccaacaagaccagttcccaccgttggatcattcttatcgaaggatccaacattccggggat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34953250 |
ttgatttgaagcttcatgacatcaccacaagcgggtgcaccaacaagaccagttcccaccgttggatcattcttatcgaaggatccaacattccggggat |
34953151 |
T |
|
| Q |
230 |
tgtcgtagtgatccaccaccct |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34953150 |
tgtcgtagtgatccaccaccct |
34953129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 44 - 249
Target Start/End: Complemental strand, 34957257 - 34957046
Alignment:
| Q |
44 |
acctaccaacagaagatgaagcaatggcggaaccacaaccaaaggtcttaaagcgagcatcaatgattttcccattctcatcaaccttgatttgaagctt |
143 |
Q |
| |
|
|||||||||| || ||||||||||| | ||||||||| |||||||||||||||| ||| |||| |||||||||||||||| | ||||| || |||||||| |
|
|
| T |
34957257 |
acctaccaacggacgatgaagcaatagtggaaccacatccaaaggtcttaaagcaagcttcaacgattttcccattctcaacgaccttaatatgaagctt |
34957158 |
T |
|
| Q |
144 |
catgacatcacc------acaagcgggtgcaccaacaagaccagttcccaccgttggatcattcttatcgaaggatccaacattccggggattgtcgtag |
237 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
34957157 |
cataacatcaccttcaccacaagcgggtgcaccaacaagaccaattcccacatccggattattcttatcgaaggatccaacattccggggtttttcgtag |
34957058 |
T |
|
| Q |
238 |
tgatccaccacc |
249 |
Q |
| |
|
|||||||||||| |
|
|
| T |
34957057 |
tgatccaccacc |
34957046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 34944542 - 34944414
Alignment:
| Q |
44 |
acctaccaacagaagatgaagcaatggcggaaccacaaccaaaggtcttaaagcgagcatcaatgattttcccattctcatcaaccttgatttgaagctt |
143 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||||| ||||| || ||||| || |
|
|
| T |
34944542 |
acctaccaacggaggatgaagcaatggcggaaccacatccaaaggtcttaaagcaagcttcaacgattttcccattctcatcgaccttaatctgaaggtt |
34944443 |
T |
|
| Q |
144 |
catgacatcaccacaagcgggtgcaccaa |
172 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
34944442 |
cataacatcaccacaagcgggtgcaccaa |
34944414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University