View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1364_low_77 (Length: 250)

Name: NF1364_low_77
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1364_low_77
NF1364_low_77
[»] chr8 (5 HSPs)
chr8 (125-240)||(6868887-6869002)
chr8 (47-84)||(15601322-15601359)
chr8 (47-83)||(3416762-3416798)
chr8 (4-32)||(27072529-27072557)
chr8 (47-83)||(36573632-36573668)
[»] chr1 (6 HSPs)
chr1 (180-240)||(47149668-47149725)
chr1 (47-84)||(13534058-13534095)
chr1 (47-83)||(22388431-22388467)
chr1 (47-83)||(31058645-31058681)
chr1 (47-83)||(40116922-40116958)
chr1 (47-83)||(40315550-40315586)
[»] chr7 (1 HSPs)
chr7 (47-84)||(30023221-30023258)
[»] scaffold0113 (1 HSPs)
scaffold0113 (47-83)||(12558-12594)
[»] chr5 (1 HSPs)
chr5 (47-83)||(42546280-42546316)
[»] chr4 (6 HSPs)
chr4 (47-83)||(12594668-12594704)
chr4 (2-34)||(23590636-23590668)
chr4 (2-34)||(25706006-25706038)
chr4 (4-32)||(31559192-31559220)
chr4 (47-83)||(32465563-32465599)
chr4 (47-83)||(42260273-42260309)
[»] chr3 (1 HSPs)
chr3 (6-34)||(19238371-19238399)
[»] chr2 (3 HSPs)
chr2 (47-83)||(6730507-6730543)
chr2 (47-83)||(20207123-20207159)
chr2 (6-34)||(38939171-38939199)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 6869002 - 6868887
Alignment:
Q  125 taattgcatatttcatcctttttaaaatatcaccctatatattacaagaaagaataagtttatatactcgtcggagatagtttaactgcaaattctccga 224  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6869002 taattgcatatttcctcctttttaaaatatcaccctgtatattacaagaaagaataagtttatatactcgtcggagatagtttaactgcaaattctccga 6868903  T
Q  225 cttagctctgtttcat 240  Q
     |||||||||||||||    
T  6868902 tttagctctgtttcat 6868887  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 15601359 - 15601322
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaat 84  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  15601359 taacataagaatttgacggagggggtaaattgattaat 15601322  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 3416798 - 3416762
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    |||||||||||||||| |||||||||||||| |||||    
T  3416798 taacataagaatttgaaggagagggtaaattgattaa 3416762  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 27072529 - 27072557
Alignment:
Q  4 gacattttgaacataagtgcaaaacttca 32  Q
    |||||||||||||||||||||||||||||    
T  27072529 gacattttgaacataagtgcaaaacttca 27072557  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 36573632 - 36573668
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  36573632 taacagaagaatttgacggagagggtaaattgattaa 36573668  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 47149668 - 47149725
Alignment:
Q  180 aagtttatatactcgtcggagatagtttaactgcaaattctccgacttagctctgtttcat 240  Q
    ||||||||||||||||||||||||| ||||   |||||| ||||| |||||||||||||||    
T  47149668 aagtttatatactcgtcggagatagcttaa---caaattttccgatttagctctgtttcat 47149725  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 13534058 - 13534095
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaat 84  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  13534058 taacataagaatttgacggagggggtaaattgattaat 13534095  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 22388467 - 22388431
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  22388467 taacagaagaatttgacggagagggtaaattgattaa 22388431  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 31058645 - 31058681
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  31058645 taacagaagaatttgacggagagggtaaattgattaa 31058681  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 40116922 - 40116958
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  40116922 taacataagaatttgacggagtgggtaaattgattaa 40116958  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 40315550 - 40315586
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  40315550 taacaaaagaatttgacggagggggtaaattaattaa 40315586  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 30023221 - 30023258
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaat 84  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  30023221 taacagaagaatttgacggagagggtaaattgattaat 30023258  T

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Target: scaffold0113 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 12594 - 12558
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  12594 taacagaagaatttgacggagagggtaaattgattaa 12558  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 42546316 - 42546280
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  42546316 taacagaagaatttgacggagagggtaaattgattaa 42546280  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 12594704 - 12594668
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  12594704 taacagaagaatttgacggagagggtaaattgattaa 12594668  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 23590668 - 23590636
Alignment:
Q  2 gagacattttgaacataagtgcaaaacttcaag 34  Q
    ||||||||||| |||||||||||||||||||||    
T  23590668 gagacattttgcacataagtgcaaaacttcaag 23590636  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 25706006 - 25706038
Alignment:
Q  2 gagacattttgaacataagtgcaaaacttcaag 34  Q
    ||||||||||| |||||||||||||||||||||    
T  25706006 gagacattttgcacataagtgcaaaacttcaag 25706038  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 31559220 - 31559192
Alignment:
Q  4 gacattttgaacataagtgcaaaacttca 32  Q
    |||||||||||||||||||||||||||||    
T  31559220 gacattttgaacataagtgcaaaacttca 31559192  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 32465563 - 32465599
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  32465563 taacataagaatttgacggagggggtaaattgattaa 32465599  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 42260273 - 42260309
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  42260273 taacagaagaatttgacggagagggtaaattgattaa 42260309  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 19238399 - 19238371
Alignment:
Q  6 cattttgaacataagtgcaaaacttcaag 34  Q
    |||||||||||||||||||||||||||||    
T  19238399 cattttgaacataagtgcaaaacttcaag 19238371  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 6730543 - 6730507
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    |||||||||||||||| |||||||||||||| |||||    
T  6730543 taacataagaatttgaaggagagggtaaattgattaa 6730507  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 20207159 - 20207123
Alignment:
Q  47 taacataagaatttgacggagagggtaaattaattaa 83  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  20207159 taacataagaatttgacagagagggtaaattgattaa 20207123  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 38939171 - 38939199
Alignment:
Q  6 cattttgaacataagtgcaaaacttcaag 34  Q
    |||||||||||||||||||||||||||||    
T  38939171 cattttgaacataagtgcaaaacttcaag 38939199  T

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