View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_78 (Length: 250)
Name: NF1364_low_78
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_78 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 4625525 - 4625287
Alignment:
| Q |
12 |
acagataaaagaaacttcaaaaggtaagcaaaaaatacataccttggtgcaagaaaaaatggaacagggtccctagcaaaagttggatgaggaattgcag |
111 |
Q |
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| T |
4625525 |
acagataaaagaaacttcaaaaggtaagcaaaaaatacataccttggtgcaagaaaaaatggaacagggtccctagcaaaagttggatgaggaattgcag |
4625426 |
T |
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| Q |
112 |
gaagattacaacctatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcatgtgcatcctccaagttattcac |
211 |
Q |
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| T |
4625425 |
gaagattacaacctatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcatgtgcatcctccaagttattcac |
4625326 |
T |
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| Q |
212 |
cactgcctgaaaaattcacaccacaatatcatcaaattc |
250 |
Q |
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| T |
4625325 |
cactgcctgaaaaattcacaccacaatatcatcaaattc |
4625287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 25604579 - 25604450
Alignment:
| Q |
90 |
aaagttggatgaggaattgcaggaagattacaacctatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcat |
189 |
Q |
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| T |
25604579 |
aaagtgggatgaggaataccaggcaagttacagccaatgcttatataaacgggcttgctctctttcagcgcagttgaaatcgcagtatcaatcaactcat |
25604480 |
T |
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| Q |
190 |
gtgcatcctccaagttattcaccactgcct |
219 |
Q |
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| T |
25604479 |
gagcatcttccaagttattcaccacagcct |
25604450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 219
Target Start/End: Complemental strand, 25624289 - 25624159
Alignment:
| Q |
89 |
aaaagttggatgaggaattgcaggaagattacaacctatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttca |
188 |
Q |
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|||||| || |||||||||||||| | ||||| | ||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||| | ||| |
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| T |
25624289 |
aaaagtggggtgaggaattgcaggcaagttacagctaatgcttatatagacaggcttgctctctttcagtgcagttgagattgcagtatcaatcaactca |
25624190 |
T |
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| Q |
189 |
tgtgcatcctccaagttattcaccactgcct |
219 |
Q |
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| T |
25624189 |
tgagcatcttccaagtgattcaccacagcct |
25624159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 20434989 - 20434895
Alignment:
| Q |
125 |
tatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcatgtgcatcctccaagttattcaccactgcct |
219 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| | |||||||||||| |||||||| || ||||| |||| |
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| T |
20434989 |
tatgcttatataaacaggcttgctttctttcagtgctgttgagattgcagtgtcaatcatttcatgtgcatcttccaagttgttgaccacagcct |
20434895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 5331063 - 5330969
Alignment:
| Q |
125 |
tatgcttatataaacaggcttgctttctttcaaagcagttgaaattgcagtatcaataagttcatgtgcatcctccaagttattcaccactgcct |
219 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| | |||||||||||| |||||||| || ||||| |||| |
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| T |
5331063 |
tatgcttatataaacaggcttgctttctttcagtgctgttgagattgcagtgtcaatcatttcatgtgcatcttccaagttgttgaccacagcct |
5330969 |
T |
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