View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_8 (Length: 562)
Name: NF1364_low_8
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_8 |
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| [»] scaffold0001 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 182 - 529
Target Start/End: Complemental strand, 52185286 - 52184931
Alignment:
| Q |
182 |
aattttcaagagttgattgattatgggacacctttagaggaatccgaagctgagatcatcttctgtaacatctgagttgtctcttcctgggacgacatca |
281 |
Q |
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| T |
52185286 |
aattttcaagagttgattgattatgggacacctttagaggaatccgaagctgagatcatcttctgtaacatctgagttgtctcttcctgggacatcatca |
52185187 |
T |
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| Q |
282 |
tcatcatctctttactattctttggcttcatgttatatggctcaaaaaattccttgttcaccttctctagctcattccacactgcattcatcc------- |
374 |
Q |
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| T |
52185186 |
tcatcatctctttactattctttggcttcatgttatatggctcaaaaaattccttgttcaccttctctagctcattccacactgcattcatccattattc |
52185087 |
T |
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| Q |
375 |
-attaattgatcgtcatgtttcatagatatattcatattccaacgtaatttcatttcaaannnnnnnnnnnngcatgctagtgtttggttgtttgtctta |
473 |
Q |
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| T |
52185086 |
cattaattgatcgtcatgtttcatagatatattcatattccaacgtaatttcatttcaaaacacacacacacgcatgctagtgtttggttgtttgtctta |
52184987 |
T |
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| Q |
474 |
tcaaacaaccagtctacattagacctacgagagtagagaaaccgaccaattctttt |
529 |
Q |
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| T |
52184986 |
tcaaacaaccagtctacattagacctatgagagtagagaaaccgaccaattctttt |
52184931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 52185490 - 52185332
Alignment:
| Q |
29 |
actacaaaggttggcaaggcattctgttatattcatgataactacaataccataataatgtagagaagcaacatgacaacacatacgataattgcgcata |
128 |
Q |
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| T |
52185490 |
actacaaaggttggcaaggcattctgttatattcatgataactacaataccataataatgtagagaagcaacatgacaacacatacgataattgcgcata |
52185391 |
T |
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| Q |
129 |
gactactagcactaggttttgataataataaagtagggacgatcctttctctgaatttt |
187 |
Q |
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| T |
52185390 |
gactactagcactaggttttgataataataaagtagggacgatcctttctctgaatttt |
52185332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 210 - 372
Target Start/End: Complemental strand, 66889 - 66733
Alignment:
| Q |
210 |
cacctttagaggaatccgaagctgagatcatcttctgtaacatctgagttgtctcttcctgggacgacatcatcatcatctctttactattctttggctt |
309 |
Q |
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| T |
66889 |
cacctttagaggaatccgaagctgagatcatcttctgtaacatccgagttgtctcttcctgggac------atcattatctcttcattattctttggctt |
66796 |
T |
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| Q |
310 |
catgttatatggctcaaaaaattccttgttcaccttctctagctcattccacactgcattcat |
372 |
Q |
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| T |
66795 |
catcttatatgcctcaaaaaattccttgttcaccttctctagctcattccacactgcattcat |
66733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 67105 - 66947
Alignment:
| Q |
31 |
tacaaaggttggcaaggcattctgttatattcatgataactacaataccataataatgtagagaagcaacatgacaacacatacgataattgcgcataga |
130 |
Q |
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| T |
67105 |
tacaaaggttgacaaggtattatgttatattcttgacaattacagtaccataataatgcagaggagcaacatgacaacacatacgataattgcgcataga |
67006 |
T |
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| Q |
131 |
ctactagcactaggttttgataataataaagtagggacgatcc--tttctctgaatttt |
187 |
Q |
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| T |
67005 |
ctactagcactaggttttgataataataaagtagggaagatccaattcctctgaatttt |
66947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 66689 - 66641
Alignment:
| Q |
457 |
tttggttgtttgtcttatcaaacaaccagtctacattagacctacgaga |
505 |
Q |
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| T |
66689 |
tttggttgtttgtcctatctaacaaccagtctacgtttgacctatgaga |
66641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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