View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364_low_90 (Length: 225)
Name: NF1364_low_90
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364_low_90 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 43263436 - 43263631
Alignment:
| Q |
1 |
caggtcttgctgttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaac |
100 |
Q |
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| T |
43263436 |
caggtcttgctgttgtttctaagaagattctaagggtttcgacacttgcgaatgatagggctgtaaggattctgttgtctgtttcaagattctctgcaac |
43263535 |
T |
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| Q |
101 |
tcctaatgttgttcaagaaatgcttaaacttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagc |
196 |
Q |
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| T |
43263536 |
tcctaatgttgttcaagaaatgcttaaacttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagc |
43263631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 24890174 - 24889991
Alignment:
| Q |
13 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
112 |
Q |
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| T |
24890174 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagaattcttctatctgtttcaagattttctgctacacattttgttgt |
24890075 |
T |
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| Q |
113 |
tcaagaaatgcttaaacttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagc |
196 |
Q |
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| T |
24890074 |
tcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaaggagaaagc |
24889991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 24899793 - 24899976
Alignment:
| Q |
13 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
112 |
Q |
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| T |
24899793 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagtattcttctatctgtttcaagattttctgctacacattttgttgt |
24899892 |
T |
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| Q |
113 |
tcaagaaatgcttaaacttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagc |
196 |
Q |
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| T |
24899893 |
tcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaaggagaaagc |
24899976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 24907252 - 24907435
Alignment:
| Q |
13 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
112 |
Q |
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||||||| ||||||||| | |||||||| ||| | || |||||||||||||| || ||||| | |||||||||||||| ||||| || | | |||||| |
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| T |
24907252 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagaattcttctatctgtttcaagattttctgctacacattttgttgt |
24907351 |
T |
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| Q |
113 |
tcaagaaatgcttaaacttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagc |
196 |
Q |
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| T |
24907352 |
tcaagaaatgttgagaattggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaaggagaaagc |
24907435 |
T |
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