View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1364_low_99 (Length: 215)

Name: NF1364_low_99
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1364_low_99
NF1364_low_99
[»] chr8 (2 HSPs)
chr8 (1-98)||(15151308-15151406)
chr8 (18-90)||(16822006-16822079)
[»] chr7 (2 HSPs)
chr7 (9-98)||(4633993-4634083)
chr7 (18-90)||(32238918-32238991)
[»] chr4 (3 HSPs)
chr4 (1-98)||(6136102-6136200)
chr4 (9-89)||(17405158-17405239)
chr4 (10-98)||(2946660-2946749)
[»] chr2 (5 HSPs)
chr2 (1-98)||(17673416-17673514)
chr2 (1-92)||(1644616-1644708)
chr2 (1-92)||(17628345-17628437)
chr2 (9-98)||(37081337-37081427)
chr2 (1-98)||(19569582-19569680)
[»] chr3 (1 HSPs)
chr3 (8-86)||(9021789-9021868)
[»] chr1 (4 HSPs)
chr1 (1-98)||(28538506-28538604)
chr1 (18-98)||(23971060-23971141)
chr1 (1-98)||(2900411-2900506)
chr1 (1-98)||(27908301-27908399)
[»] chr6 (2 HSPs)
chr6 (10-98)||(27991531-27991620)
chr6 (34-97)||(13627831-13627895)
[»] chr5 (3 HSPs)
chr5 (1-98)||(15023573-15023671)
chr5 (9-91)||(21714326-21714409)
chr5 (9-91)||(21788240-21788323)


Alignment Details
Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 15151406 - 15151308
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcat-atgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  15151406 gatcctagcttagagccaattcgttcacatatcaatgatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttttcgttcat 15151308  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 16822079 - 16822006
Alignment:
Q  18 aattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtcttt 90  Q
    |||| ||||||| || || |||| ||||||||||| |||||| | | |||||||||||||||||||||||||||    
T  16822079 aattggttcacacttcaatgattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtcttt 16822006  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 4633993 - 4634083
Alignment:
Q  9 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||| |||||||| |||||||||| ||||||| ||| |||| || |||||||||| ||||| |||||||||||||||||||||||||||||    
T  4633993 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcat 4634083  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 32238918 - 32238991
Alignment:
Q  18 aattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtcttt 90  Q
    |||| ||||||| |||||||||| ||||||| ||| || ||||| | ||||||||||||| |||||||||||||    
T  32238918 aattagttcacactttaaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttt 32238991  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 6136200 - 6136102
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||||| ||||||||| ||||  ||||||||| ||||||| |||| |||||||||||||||  || ||||||||||||||||||||||||||| |||||    
T  6136200 gatcctagcttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatatcaaatgaaatgtttaatagtctttccattcat 6136102  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 17405158 - 17405239
Alignment:
Q  9 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagtctt 89  Q
    |||||||| |||| ||||||| || ||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  17405158 cttagagctaattggttcacacttaaaaaattcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtctt 17405239  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 2946749 - 2946660
Alignment:
Q  10 ttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    ||||||| |||| | || ||||| ||||||| |||| ||||||||||||||| | |||||||||||||||| |||||||||||| |||||    
T  2946749 ttagagctaattggctcgcatttcaaagattcatacatgtgttcttcttgcacaatgtcaaatgaaatgttaaatagtctttccattcat 2946660  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 17673416 - 17673514
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||||| ||||||||| |||| |||||||||| ||||||| || |||||||||||||||||  | |||||||||||||||| ||||||||||| |||||    
T  17673416 gatcctagcttagagctaattggttcacatttcaaagattcatgcttgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttccattcat 17673514  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1644708 - 1644616
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtctttcc 92  Q
    |||||| ||||||||| |||| |||||||||| ||||||| |||| | || |||||||||| | |||||||||||||||||||||||||||||    
T  1644708 gatcctagcttagagctaatttgttcacatttcaaagattcatacctatgctcttcttgcacaatgtcaaatgaaatgtttaatagtctttcc 1644616  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 17628345 - 17628437
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagtctttcc 92  Q
    |||||| ||||||||| ||||  ||||||||| ||||||| || |||||||||||||||||  | |||||||||||||||| |||||||||||    
T  17628345 gatcctagcttagagctaattgattcacatttcaaagattcatgcttgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttcc 17628437  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 37081337 - 37081427
Alignment:
Q  9 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||||||| |||  |||||||||| ||||||| ||||||||||||||||||||  || | |||| |||||||| |||||||||||||||||    
T  37081337 cttagagctaatcggttcacatttcaaagattcatacttgtgttcttcttgcacaatataaaataaaatgtttgatagtctttccgttcat 37081427  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 19569680 - 19569582
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||||| |||||||||  ||  ||||||| || ||| ||| ||| ||||||| |||||||| | ||||||||||||||||||||||||||||| |||||    
T  19569680 gatcctagcttagagctcatcggttcacaattcaaaaattcatatttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttccattcat 19569582  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 9021789 - 9021868
Alignment:
Q  8 gcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagt 86  Q
    ||||||||| |||| ||| |||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  9021789 gcttagagctaattggtttacatttcaaagattcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagt 9021868  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28538604 - 28538506
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||||| ||||||||  |||| |||||||||| ||||||| |||||||||||||||| |||  |||||||||||||||||| ||| ||||||| |||||    
T  28538604 gatcctagcttagagttaattggttcacatttcaaagattcatacttgtgttcttctagcacaatgtcaaatgaaatgtttcataatctttccattcat 28538506  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 23971060 - 23971141
Alignment:
Q  18 aattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||| ||||||| || ||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||| ||||||    
T  23971060 aattggttcacacttcaaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttcagttcat 23971141  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 2900506 - 2900411
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||||| ||||||||| |||| |||  ||||| ||||||||||||||||||||||   ||| | ||||||||||||||||||||||||||||| |||||    
T  2900506 gatcctagcttagagctaattggttgtcatttcaaagatttatacttgtgttctt---gcacaatgtcaaatgaaatgtttaatagtctttccattcat 2900411  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 27908399 - 27908301
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||||| ||||||||| |||| |||||||||| ||| ||| |||||||||||||| |||||  |||| ||||||||| |||| || ||||||| |||||    
T  27908399 gatcctagcttagagctaattggttcacatttcaaatattcatacttgtgttcttgttgcacaatgtgaaatgaaatatttattaatctttccattcat 27908301  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 27991531 - 27991620
Alignment:
Q  10 ttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    ||||||| ||||  ||||||||| || |||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |||||    
T  27991531 ttagagctaattgattcacatttcaatgattcatacttgtgttctttttgcataatgtaaaatgaaatgtttaatagtctttccattcat 27991620  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 13627895 - 13627831
Alignment:
Q  34 aaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtctttccgttca 97  Q
    ||||||| ||| ||||||| |||||||||| |||||||| ||||||||||||||| || ||||||    
T  13627895 aaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttca 13627831  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 15023573 - 15023671
Alignment:
Q  1 gatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcata-tgtcaaatgaaatgtttaatagtctttccgttcat 98  Q
    |||||| | ||||||| ||||  ||||||||| ||| ||| |||||||||||||| ||| | | ||||||||||||||||||||||||||||| |||||    
T  15023573 gatcctagtttagagctaattgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtcaaatgaaatgtttaatagtctttccattcat 15023671  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 21714409 - 21714326
Alignment:
Q  9 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagtctttc 91  Q
    ||||| || |||| |||||||||| ||| ||| ||||||||||||||| ||||  || ||||||||||| ||||||||||||||    
T  21714409 cttagggctaattggttcacatttcaaatattcatacttgtgttcttcatgcacaatatcaaatgaaatatttaatagtctttc 21714326  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 21788323 - 21788240
Alignment:
Q  9 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgca-tatgtcaaatgaaatgtttaatagtctttc 91  Q
    ||||| || |||| |||||||||| ||| ||| ||||||||||||||| ||||  || ||||||||||| ||||||||| ||||    
T  21788323 cttagggctaattggttcacatttcaaatattcatacttgtgttcttcatgcacaatatcaaatgaaatatttaatagtttttc 21788240  T

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