View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1365-INSERTION-1 (Length: 351)

Name: NF1365-INSERTION-1
Description: NF1365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1365-INSERTION-1
NF1365-INSERTION-1
[»] chr2 (3 HSPs)
chr2 (40-351)||(16124718-16125029)
chr2 (8-351)||(16334622-16334965)
chr2 (83-351)||(16126914-16127182)
[»] chr3 (20 HSPs)
chr3 (8-351)||(36017172-36017515)
chr3 (8-351)||(36034078-36034425)
chr3 (8-314)||(36004509-36004815)
chr3 (8-314)||(36025270-36025576)
chr3 (9-314)||(23449074-23449379)
chr3 (11-311)||(23465209-23465509)
chr3 (9-311)||(23500837-23501139)
chr3 (11-311)||(23353706-23354006)
chr3 (11-295)||(23480566-23480850)
chr3 (9-311)||(23406553-23406855)
chr3 (80-312)||(36009629-36009861)
chr3 (11-289)||(23455840-23456118)
chr3 (8-311)||(23441683-23441986)
chr3 (8-311)||(23474215-23474518)
chr3 (156-311)||(23435419-23435574)
chr3 (130-295)||(21087312-21087477)
chr3 (67-311)||(23388251-23388495)
chr3 (107-297)||(21088477-21088667)
chr3 (89-265)||(35766233-35766409)
chr3 (11-111)||(23435277-23435377)
[»] chr4 (1 HSPs)
chr4 (8-311)||(12894620-12894923)
[»] scaffold0201 (1 HSPs)
scaffold0201 (11-296)||(13383-13668)
[»] scaffold0570 (1 HSPs)
scaffold0570 (11-296)||(9672-9957)
[»] scaffold0022 (1 HSPs)
scaffold0022 (181-296)||(167562-167677)
[»] chr8 (6 HSPs)
chr8 (175-218)||(12178788-12178831)
chr8 (175-218)||(12190483-12190526)
chr8 (175-218)||(12423216-12423259)
chr8 (175-218)||(12434911-12434954)
chr8 (172-218)||(6097884-6097930)
chr8 (178-211)||(5568730-5568763)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 40 - 351
Target Start/End: Original strand, 16124718 - 16125029
Alignment:
Q  40 tgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagatggatctatttcatagaaaattggtatcacaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16124718 tgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagatggatctatttcatagaaaattggtatcacaa 16124817  T
Q  140 tttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcaca 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16124818 tttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcaca 16124917  T
Q  240 tgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataaatgtcttaacaccgctctttttcaaagct 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16124918 tgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataaatgtcttaacaccgctctttttcaaagct 16125017  T
Q  340 tcattaagatgg 351  Q
    ||||||||||||    
T  16125018 tcattaagatgg 16125029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 16334965 - 16334622
Alignment:
Q  8 catctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgaga 107  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  16334965 catctttccatttttgcaagttgtctttcttgtgcctcaaattcttctcatactttgcaaaggcttgcccgtagctcccaatctgatatctcacatgaga 16334866  T
Q  108 tggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16334865 tggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagca 16334766  T
Q  208 tagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtcta 307  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  16334765 tagttttctgataagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgttgtcatcta 16334666  T
Q  308 taaatgtcttaacaccgctctttttcaaagcttcattaagatgg 351  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  16334665 taaatgtcttaaggccgctctttttcaaagcttcattaagatgg 16334622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 83 - 351
Target Start/End: Original strand, 16126914 - 16127182
Alignment:
Q  83 tcccaatctgatttctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttc 182  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16126914 tcccaatctgatatctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttc 16127013  T
Q  183 attcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatct 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16127014 attcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatct 16127113  T
Q  283 ccttttttaagctcgctgtcgtctataaatgtcttaacaccgctctttttcaaagcttcattaagatgg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16127114 ccttttttaagctcgctgtcgtctataaatgtcttaacaccgctctttttcaaagcttcattaagatgg 16127182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 351
Target Start/End: Original strand, 36017172 - 36017515
Alignment:
Q  8 catctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgaga 107  Q
    |||||||| ||||||||||||||||||| |||||||||||||| | || || ||||||||||||||||  |||||||||||| ||||| |||||||| ||    
T  36017172 catctttctatttctgcaacttgtctttgttgtgcttcaaattttgcttattctttgcaaaggcttgcttgtaactcccaatttgattcctcacatgtga 36017271  T
Q  108 tggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagca 207  Q
    |||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  36017272 tggatctatttcgtagaaaatcggtatcacaatttgtccctgatctttcttgcattctagaatcttgacgagttcattcaagcatcatttagaagaagca 36017371  T
Q  208 tagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtcta 307  Q
    |||||||  || || |||||||||||||||  |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||    
T  36017372 tagtctttcgagaatatgactatagatgcatctgactcctcaatggctttgatcagtgctgatgagatctcgtctcctttttcaagctcgctgtcatcta 36017471  T
Q  308 taaatgtcttaacaccgctctttttcaaagcttcattaagatgg 351  Q
     ||||||| |||| || ||| |||||| ||||||||||||||||    
T  36017472 caaatgtcctaacgccactccttttcagagcttcattaagatgg 36017515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 351
Target Start/End: Original strand, 36034078 - 36034425
Alignment:
Q  8 catctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgaga 107  Q
    |||||||| ||||||||||||||||||| |||||||||||||| | || |||||||||||||||||||  |||||||||||| ||||| |||||||| ||    
T  36034078 catctttctatttctgcaacttgtctttgttgtgcttcaaattttgcttatgctttgcaaaggcttgcttgtaactcccaatttgattcctcacatgtga 36034177  T
Q  108 tggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagca 207  Q
    |||||||||||| |||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36034178 tggatctatttcgtagaaaatcggtatcacaatctgcccatgatctttcttgcattctagaatcttgacgagttcattcaaataccattttgaagaagca 36034277  T
Q  208 tagtcttctgaaaagatgactat----agatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcg 303  Q
    ||||||| ||| || |||| |||    |||||||  |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  36034278 tagtcttttgagaatatgaatatatagagatgcatctgactcctcaatggctttgatcagtgctgatgagatctcgtctcctttttcaagctcgctgtcg 36034377  T
Q  304 tctataaatgtcttaacaccgctctttttcaaagcttcattaagatgg 351  Q
    ||||||||||||  ||  |||||||||| || ||||| ||||||||||    
T  36034378 tctataaatgtccaaaggccgctcttttgcagagctttattaagatgg 36034425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 36004509 - 36004815
Alignment:
Q  8 catctttccatttctgcaacttgtctttcttgtgcttcaaattcttct-catgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgag 106  Q
    |||||||||||||||  ||| | ||||| || |||||||||| ||  | |||| ||||||||||||||||| ||||| ||| | ||||| |||||||| |    
T  36004509 catctttccatttctttaacatttctttgttctgcttcaaat-ctcgtgcatgttttgcaaaggcttgcccataacttccattttgattcctcacatgtg 36004607  T
Q  107 atggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagc 206  Q
    ||||||||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  36004608 atggatctatttcgtagaaaatcggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcaccattttgaggaagc 36004707  T
Q  207 atagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtct 306  Q
     ||||||| ||| |||||||| ||||||||| | || |||||||| ||||||||||||||||| |||||||| |||||||||| ||||||  |||| |||    
T  36004708 gtagtcttttgagaagatgacgatagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatct 36004807  T
Q  307 ataaatgt 314  Q
    ||||||||    
T  36004808 ataaatgt 36004815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 36025270 - 36025576
Alignment:
Q  8 catctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgaga 107  Q
    ||||||||||||| ||||| ||||||||  | ||||||||||  |  ||||| ||| |||| |||  |   ||||| ||  ||||||| |||||||| ||    
T  36025270 catctttccatttttgcaatttgtctttgctctgcttcaaatcttgttcatgtttttcaaaagctaacatataacttcctttctgattcctcacatgtga 36025369  T
Q  108 tggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagca 207  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  36025370 tggatctatttcatagaaaacaggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagca 36025469  T
Q  208 tagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtcta 307  Q
    ||||||| ||| |||||||| ||||||||| | ||||  ||||| ||||||||||||||||| |||||||| |||||||||| ||||||  |||| ||||    
T  36025470 tagtcttttgagaagatgacgatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatcta 36025569  T
Q  308 taaatgt 314  Q
    |||||||    
T  36025570 taaatgt 36025576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 23449074 - 23449379
Alignment:
Q  9 atctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagat 108  Q
    |||||||||||||| ||||||||| || |||||||||||||  | || ||| |||||||||||||||  |||||||||  |||| || |||||||| |||    
T  23449074 atctttccatttcttcaacttgtcattattgtgcttcaaatcttgcttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgat 23449173  T
Q  109 ggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcat 208  Q
    |||||||| |  || |||| |||||||||||| |||    ||| |||||||||||| ||||||||   ||| |||||||| ||||||||||| |||||||    
T  23449174 ggatctatgttgtaaaaaactggtatcacaatctgttgcatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcat 23449273  T
Q  209 agtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctat 308  Q
    ||| |||||| |||||||| |||||||||  |||||| |||||||||||||| |||||||  ||||||||||||||||||  ||||||  ||| ||||||    
T  23449274 agttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctccttttcgaagctcattgttgtctat 23449373  T
Q  309 aaatgt 314  Q
    ||||||    
T  23449374 aaatgt 23449379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 23465209 - 23465509
Alignment:
Q  11 ctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagatgg 110  Q
    |||||||||||| |||||| || || ||||||||||||||   || ||| |||||||||||||||  |||||||||  |||| || |||||||| |||||    
T  23465209 ctttccatttctccaacttatcgttattgtgcttcaaatttcgcttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 23465308  T
Q  111 atctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatag 210  Q
    |||||| |  || |||| |||||||||||| ||| |  ||| |||||||||||| ||||||||   ||| |||||||| ||||||||||| |||||||||    
T  23465309 atctatgttgtaaaaaactggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatag 23465408  T
Q  211 tcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataa 310  Q
    | |||||| |||||||| |||||||||  |||||| |||||||||||||| |||||||  ||||||||||||||||||| ||||||  ||| ||||||||    
T  23465409 ttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataa 23465508  T
Q  311 a 311  Q
    |    
T  23465509 a 23465509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 23500837 - 23501139
Alignment:
Q  9 atctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagat 108  Q
    |||||||||||||| ||||||||| || |||||||||||||    || ||| |||||||||||||||  |||||||||  |||| || |||||||| |||    
T  23500837 atctttccatttcttcaacttgtcattattgtgcttcaaatctcgcttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgat 23500936  T
Q  109 ggatctatttcatagaaaattggtatcacaatttg-tccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagca 207  Q
    |||||||| |  || |||| |||||||||||| || ||||| || |||||| ||||| ||||||||   ||| |||||||| ||||||||||| ||||||    
T  23500937 ggatctatgttgtaaaaaactggtatcacaatctgctccat-atatttcttacattcaagaatctttttgagctcattcaagcaccattttgacgaagca 23501035  T
Q  208 tagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtcta 307  Q
    |||| |||||| |||||||| |||||||||  |||||| |||||||||||||| |||||||  ||||||||||||||||||| ||||||  ||| |||||    
T  23501036 tagttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtcta 23501135  T
Q  308 taaa 311  Q
    ||||    
T  23501136 taaa 23501139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 23353706 - 23354006
Alignment:
Q  11 ctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagatgg 110  Q
    |||||||||||| ||||||||| || |||||||||||||    || ||| ||| |||||||||||  |||||||||  |||| || |||||||| |||||    
T  23353706 ctttccatttctccaacttgtcattattgtgcttcaaatctcgcttatgtttttcaaaggcttgcttgtaactcccggtctgcttcctcacatgtgatgg 23353805  T
Q  111 atctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatag 210  Q
    |||||| |  || |||| |||||||||||| |||    ||| |||||||||||| ||||||||   ||| |||||||| ||||||||||| |||||||||    
T  23353806 atctatgttgtaaaaaactggtatcacaatctgttacatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatag 23353905  T
Q  211 tcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataa 310  Q
    | |||||| |||||||| |||||||||  |||||| |||||||||||||| |||||||  ||||||||||||||||||| ||||||  ||| ||||||||    
T  23353906 ttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataa 23354005  T
Q  311 a 311  Q
    |    
T  23354006 a 23354006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 23480566 - 23480850
Alignment:
Q  11 ctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagatgg 110  Q
    ||||||||| ||| |||||||| || |||  ||||||||    || ||| |||||||| |||||| ||||||||||  |||| || |||||||| |||||    
T  23480566 ctttccattcctgtaacttgtcattattgctcttcaaatctcgcttatgttttgcaaaagcttgctcgtaactcccggtctggttcctcacatgtgatgg 23480665  T
Q  111 atctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatag 210  Q
    ||||||||  || |||| |||||||||||| ||| | |||| |||||||||||| ||||||||   ||| |||||||| |||||||||||||||||||||    
T  23480666 atctattttgtaaaaaactggtatcacaatgtgttccttatatttcttgcattcaagaatcttcttgagctcattcaagcaccattttgaagaagcatag 23480765  T
Q  211 tcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagct 295  Q
    | |||||| |||||||| |||||||||  |||||  |||||||||||||| |||||||  ||||||||||||||||||| |||||    
T  23480766 ttttctgagaagatgacaatagatgcatgtgacttctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagct 23480850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 23406553 - 23406855
Alignment:
Q  9 atctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagat 108  Q
    |||||||||||||| ||||||||| || |||||||| ||||    || ||| |||||||||||||||  |||||||||  |||| || |||||||  |||    
T  23406553 atctttccatttcttcaacttgtcattattgtgctttaaatctcgcttatgttttgcaaaggcttgcttgtaactcccggtctgcttcctcacatttgat 23406652  T
Q  109 ggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcat 208  Q
    |||||||| |  || ||||  ||||||||||| ||| |  ||| |||||||||||| ||||||||   ||| |||||||| ||||||||||| |||||||    
T  23406653 ggatctatgttgtaaaaaacaggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcat 23406752  T
Q  209 agtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctat 308  Q
    ||| |||||| |||||||| |||||||||  |||||| |||||||||||||| |||||||  ||||||||||||||||||| ||||||  ||| ||||||    
T  23406753 agttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctat 23406852  T
Q  309 aaa 311  Q
    |||    
T  23406853 aaa 23406855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 80 - 312
Target Start/End: Original strand, 36009629 - 36009861
Alignment:
Q  80 aactcccaatctgatttctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgag 179  Q
    ||||||||| ||||  ||| ||||  ||||||| |||| |  ||||||  |||||||||||||||||   |||||| |||||||||||||| ||||||||    
T  36009629 aactcccaagctgaaatctaacatccgatggatttattccgaagaaaacaggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgag 36009728  T
Q  180 ttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctca 279  Q
    ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||   ||||||| |||||||||||||| |||| |||||| ||||||    
T  36009729 ttcattcaagcaccattttgaagaagcataatcttttgaaaagatgactatagatgtgtatgactcctcaatggctttgattagtgatgatgatatctca 36009828  T
Q  280 tctccttttttaagctcgctgtcgtctataaat 312  Q
    |||||||||| ||| || | |||||| ||||||    
T  36009829 tctcctttttcaagatcaccgtcgtccataaat 36009861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 23455840 - 23456118
Alignment:
Q  11 ctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagatgg 110  Q
    |||||||||||| ||||||| | || |||||||||||||  | || ||| |||||||||||||||  |||||||||  | || || |||||||| |||||    
T  23455840 ctttccatttctccaacttggcattattgtgcttcaaatcttgcttatgttttgcaaaggcttgcttgtaactcccggtttgcttcctcacatgtgatgg 23455939  T
Q  111 atctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatag 210  Q
    ||| || |  || ||||| |||||||| || ||| |  ||| || ||||||||||||||||||   ||| |||||||||||||||||||| ||||| |||    
T  23455940 atcaatgttgtaaaaaataggtatcacgatctgttccatatattgcttgcattctagaatctttttgagatcattcaaacaccattttgaggaagcgtag 23456039  T
Q  211 tcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttt 289  Q
    | |||||| |||||||| |||||  ||  |||||| ||||||| |||||| |||| || ||||||||||||||||||||    
T  23456040 ttttctgagaagatgacaatagacacatgtgactcctcaatggttttgatgagtgttggtgagatctcatctccttttt 23456118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 23441683 - 23441986
Alignment:
Q  8 catctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgaga 107  Q
    |||||||||||| ||| |||||||| || |||  ||||||||    || ||| ||||| |||||||||  |||||||||| |||| || |||||||| ||    
T  23441683 catctttccattcctgtaacttgtcattattgctcttcaaatctcgcttatgttttgcgaaggcttgcttgtaactcccagtctgcttcctcacatgtga 23441782  T
Q  108 tggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagca 207  Q
    ||||||||| |  || ||||  ||||||||||| ||| |  ||| |||||||||||| ||||||||   ||| |||||||| ||||||||||| ||||||    
T  23441783 tggatctatgttgtaaaaaacaggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagca 23441882  T
Q  208 tagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtcta 307  Q
    |||| |||||| |||||||| |||||  ||  |||||| ||||||||| |||| |||||||  || |||| ||||||||||| ||||||  ||| |||||    
T  23441883 tagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcctttttgaagctcattgttgtcta 23441982  T
Q  308 taaa 311  Q
    ||||    
T  23441983 taaa 23441986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 23474215 - 23474518
Alignment:
Q  8 catctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgaga 107  Q
    |||||||||||| ||| |||||||| || |||  ||||||||    || ||| ||||| |||||||||  |||||||||| |||| || |||||||| ||    
T  23474215 catctttccattcctgtaacttgtcattattgctcttcaaatctcgcttatgttttgcgaaggcttgcttgtaactcccagtctgcttcctcacatgtga 23474314  T
Q  108 tggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagca 207  Q
    ||||||||| |  || ||||  ||||||||||| ||| |  ||| |||||||||||| ||||||||   ||| |||||||| ||||||||||| ||||||    
T  23474315 tggatctatgttgtaaaaaacaggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagca 23474414  T
Q  208 tagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtcta 307  Q
    |||| |||||| |||||||| |||||  ||  |||||| ||||||||| |||| |||||||  || |||| ||||||||||| ||||||  ||| |||||    
T  23474415 tagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcctttttgaagctcattgttgtcta 23474514  T
Q  308 taaa 311  Q
    ||||    
T  23474515 taaa 23474518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 23435419 - 23435574
Alignment:
Q  156 cttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggct 255  Q
    ||||||||||||||||||   ||| ||||| || |||||||||||||||||||||| |||||| |||||||| |||||||||  |||||| |||||||||    
T  23435419 cttgcattctagaatctttttgagctcatttaagcaccattttgaagaagcatagttttctgagaagatgacaatagatgcatgtgactcctcaatggct 23435518  T
Q  256 ttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataaa 311  Q
    ||||| |||||||  ||||||||||||||||||| ||||||  ||| |||||||||    
T  23435519 ttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaa 23435574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 130 - 295
Target Start/End: Original strand, 21087312 - 21087477
Alignment:
Q  130 ggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgacta 229  Q
    ||||||||||||||| | |||| |||||||||||||||||||||   ||| |||||||| ||||||||||| ||||| |||| |||||| |||||| | |    
T  21087312 ggtatcacaatttgttccttatatttcttgcattctagaatctttttgagctcattcaagcaccattttgaggaagcgtagttttctgagaagatgtcaa 21087411  T
Q  230 tagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagct 295  Q
    | ||||||  ||||||||||||||||||||| ||| ||| || ||||| |||||||||||||||||    
T  21087412 tcgatgcatgtgactcttcaatggctttgatgagttctggtgtgatcttatctccttttttaagct 21087477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 67 - 311
Target Start/End: Original strand, 23388251 - 23388495
Alignment:
Q  67 aaggcttgcccgtaactcccaatctgatttctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattcta 166  Q
    ||||||||| ||||||||||| |||| || |||||||| || |||||||| |  || ||||  ||||||||||| |||    ||| |||||||||||  |    
T  23388251 aaggcttgctcgtaactcccagtctgcttcctcacatgtgagggatctatgttgtaaaaaacaggtatcacaatctgttgcatatatttcttgcattgaa 23388350  T
Q  167 gaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgc 266  Q
    |||||||   ||| |||||||| ||||||||||| |||||||| | |||||| |||||||  || ||  |   |||||| |||||||||||||| |||||    
T  23388351 gaatcttcttgagctcattcaagcaccattttgaggaagcataattttctgagaagatgataattgacacgtgtgactcctcaatggctttgatgagtgc 23388450  T
Q  267 tgatgagatctcatctccttttttaagctcgctgtcgtctataaa 311  Q
    || |||||||||||||||||||| ||||||  ||| |||||||||    
T  23388451 tggtgagatctcatctcctttttcaagctcattgttgtctataaa 23388495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 107 - 297
Target Start/End: Original strand, 21088477 - 21088667
Alignment:
Q  107 atggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagc 206  Q
    ||||||||||||  || ||||  ||||||||||| ||| |  ||  ||||||||||||| |||||||   ||| |||||||| ||||||||||| |||||    
T  21088477 atggatctattttgtaaaaaacaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaagcaccattttgaggaagc 21088576  T
Q  207 atagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcg 297  Q
    ||||| |||||||||||| || |||||| ||| |||||| ||||| |||| ||| | |||||  |||||||| ||||||||||||||||||    
T  21088577 atagttttctgaaaagataacaatagatacacgtgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcg 21088667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 89 - 265
Target Start/End: Complemental strand, 35766409 - 35766233
Alignment:
Q  89 tctgatttctcacatgagatggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaa 188  Q
    |||||||||||||||| ||||||||||||| |||||| |  |||||||||||||||||   ||||||||| ||||| |  ||||| || | ||||| |||    
T  35766409 tctgatttctcacatgtgatggatctattttatagaacacaggtatcacaatttgtccccgatctttcttacattccatgatcttcacaatttcatccaa 35766310  T
Q  189 acaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtg 265  Q
    |||||| || || |||||||||| ||||||||| ||||| | |||  ||  |||||||||||||||| |||| ||||    
T  35766309 acaccacttggatgaagcatagttttctgaaaatatgacaacagaaacatgtgactcttcaatggctgtgatgagtg 35766233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 23435277 - 23435377
Alignment:
Q  11 ctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagatgg 110  Q
    |||||||||| ||||||||||| || |||||||||||||    || ||| |||||||| ||||||  |||||||||  |||| || |||||||| |||||    
T  23435277 ctttccatttatgcaacttgtcattattgtgcttcaaatctcgcttatgttttgcaaatgcttgcttgtaactcccggtctgcttcctcacatgtgatgg 23435376  T
Q  111 a 111  Q
    |    
T  23435377 a 23435377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 12894923 - 12894620
Alignment:
Q  8 catctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgaga 107  Q
    ||||||||||||| || ||| | |||||   |||||||||||  | ||| || |||||||||||||| | ||| |||||  | ||||| |||||||| ||    
T  12894923 catctttccatttttgtaacatatctttgccgtgcttcaaatcttgctcgtgttttgcaaaggcttgactgtacctccctgtttgattcctcacatgtga 12894824  T
Q  108 tggatctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagca 207  Q
    |||||||||||| || ||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12894823 tggatctatttcgtaaaaaacaggtatcacaatttgtccatgatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaggaagca 12894724  T
Q  208 tagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtcta 307  Q
    ||||||  ||| |||||||| ||||||||| ||||||| |||||||||||||||| |||||| || |||||||||||||||| ||||||  |||| ||||    
T  12894723 tagtctattgagaagatgacaatagatgcatatgactcctcaatggctttgatcaatgctgaggatatctcatctcctttttgaagctcattgtcatcta 12894624  T
Q  308 taaa 311  Q
    ||||    
T  12894623 taaa 12894620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 11 - 296
Target Start/End: Original strand, 13383 - 13668
Alignment:
Q  11 ctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagatgg 110  Q
    |||||||||||| |||||| || || |||||||||||||    || ||| |||||||||||||||  |||||| ||| |||| || |||||||  | |||    
T  13383 ctttccatttctccaacttatcgttattgtgcttcaaatctcgcttatgttttgcaaaggcttgctggtaacttccagtctgcttcctcacatttgctgg 13482  T
Q  111 atctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatag 210  Q
    |||||| |  || ||||  ||||||||||| ||| |  ||| |||||||||||| ||||||||   ||| ||||| || ||||||||||| |||||||||    
T  13483 atctatgttgtaaaaaacaggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcatttaagcaccattttgaggaagcatag 13582  T
Q  211 tcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctc 296  Q
    | |||||| |||||||| |||||||||  |||||| |||||||||||||| |||||||  ||||||||||||||||||| ||||||    
T  13583 ttttctgagaagatgacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctc 13668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 9957 - 9672
Alignment:
Q  11 ctttccatttctgcaacttgtctttcttgtgcttcaaattcttctcatgctttgcaaaggcttgcccgtaactcccaatctgatttctcacatgagatgg 110  Q
    ||||||| |||| ||||||||| || |||  ||||||||    || ||| ||| ||||||||||| ||||||| ||| |||| ||||||||||  | |||    
T  9957 ctttccagttcttcaacttgtcattattgctcttcaaatctcgcttatgtttttcaaaggcttgctcgtaacttccagtctgctttctcacatttgctgg 9858  T
Q  111 atctatttcatagaaaattggtatcacaatttgtccattatctttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatag 210  Q
    |||||  |  || ||||  |||||||| || ||| |  ||| || ||||||||| ||||||||   ||| ||||| || ||||||||||| |||||||||    
T  9857 atctaagttgtaaaaaacaggtatcaccatctgttccatatattgcttgcattcaagaatctttttgagctcatttaagcaccattttgaggaagcatag 9758  T
Q  211 tcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcatctccttttttaagctc 296  Q
    | |||||| ||||| || |||||||||  |||||| |||||||||||||| |||||||  ||||||||||||||||||| ||||||    
T  9757 ttttctgagaagattacaatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctc 9672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 167677 - 167562
Alignment:
Q  181 tcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatggctttgatcagtgctgatgagatctcat 280  Q
    |||||||| ||||||| ||| |||||||||| |||||| |||||||| |||||||||  | |||| |||||||||||||| |||| ||  ||||||||||    
T  167677 tcattcaagcaccattatgaggaagcatagttttctgagaagatgacaatagatgcatgttactcctcaatggctttgatgagtgttggcgagatctcat 167578  T
Q  281 ctccttttttaagctc 296  Q
    ||||||||| ||||||    
T  167577 ctcctttttgaagctc 167562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 12178788 - 12178831
Alignment:
Q  175 acgagttcattcaaacaccattttgaagaagcatagtcttctga 218  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  12178788 acgagttcattcaaacaccatgttgaagatgcatagttttctga 12178831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 12190483 - 12190526
Alignment:
Q  175 acgagttcattcaaacaccattttgaagaagcatagtcttctga 218  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  12190483 acgagttcattcaaacaccatgttgaagatgcatagttttctga 12190526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 12423216 - 12423259
Alignment:
Q  175 acgagttcattcaaacaccattttgaagaagcatagtcttctga 218  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  12423216 acgagttcattcaaacaccatgttgaagatgcatagttttctga 12423259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 12434911 - 12434954
Alignment:
Q  175 acgagttcattcaaacaccattttgaagaagcatagtcttctga 218  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||||    
T  12434911 acgagttcattcaaacaccatgttgaagatgcatagttttctga 12434954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 6097884 - 6097930
Alignment:
Q  172 ttgacgagttcattcaaacaccattttgaagaagcatagtcttctga 218  Q
    |||| |||||||| ||||||||||||||| |||||||||| ||||||    
T  6097884 ttgaggagttcatccaaacaccattttgaggaagcatagttttctga 6097930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 5568763 - 5568730
Alignment:
Q  178 agttcattcaaacaccattttgaagaagcatagt 211  Q
    |||||||||||||||||| |||||||||||||||    
T  5568763 agttcattcaaacaccatgttgaagaagcatagt 5568730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University