View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13650_high_2 (Length: 536)

Name: NF13650_high_2
Description: NF13650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13650_high_2
NF13650_high_2
[»] chr5 (19 HSPs)
chr5 (19-536)||(13855517-13856022)
chr5 (40-280)||(10209852-10210090)
chr5 (37-271)||(12104672-12104903)
chr5 (111-280)||(10109027-10109195)
chr5 (67-245)||(10215984-10216160)
chr5 (124-280)||(10105596-10105750)
chr5 (321-416)||(10108843-10108937)
chr5 (124-268)||(9660489-9660631)
chr5 (124-280)||(10212527-10212681)
chr5 (124-250)||(12109599-12109723)
chr5 (321-401)||(10210184-10210263)
chr5 (456-528)||(10211213-10211285)
chr5 (459-528)||(10213394-10213463)
chr5 (459-535)||(9684140-9684216)
chr5 (151-251)||(9674994-9675091)
chr5 (38-113)||(10109214-10109288)
chr5 (32-113)||(10212395-10212475)
chr5 (37-113)||(10105801-10105876)
chr5 (39-114)||(10102715-10102789)
[»] chr1 (1 HSPs)
chr1 (201-280)||(10542173-10542252)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 13856022 - 13855517
Alignment:
Q  19 ctccatgcttgtaggagatagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaac 118  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |    
T  13856022 ctccgtgcttgtaagaggtagaggtcctttctttttatatgtgaactgcatagtttagttt-atgaattggttgatgtgggactctatcagacacccacc 13855924  T
Q  119 ggttctcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttc 218  Q
      ||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13855923 tattctcacatatttcccctattc----cttgacacatttatttgaaatgtttaatctttttctctttgatttcatgcgtttaaaatcattttagttttc 13855828  T
Q  219 tgcaatatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagagagacaagagtgagaggatttgatccctattatgtatatg 318  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  13855827 tgcaatatctcaaaactagaacattaaccattcaatgaagcttttcttccaaaagaaagagagacaagagtgagaggatttgatccctattat------- 13855735  T
Q  319 agatatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatcnn 418  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  13855734 atatatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatctt 13855635  T
Q  419 nnnnncccttaagttggtcctttgttgtccaacagatgagctcaccttccaaccgatgagctgcattgagctaaacgatctatgcggtcttttggtttaa 518  Q
         ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||  ||||    
T  13855634 tttttcccttaagttggtcctttgttttccaacagatgagctcaccttccaaccgatgagctgcatcgagctaaacgatttattctgtcttttgtgttaa 13855535  T
Q  519 gtaagtctttaaaaacct 536  Q
    ||||||||||| ||||||    
T  13855534 gtaagtctttacaaacct 13855517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 40 - 280
Target Start/End: Original strand, 10209852 - 10210090
Alignment:
Q  40 aggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttccccta 139  Q
    ||||||| ||||||||||||  | |||||||||||||||| ||||||||| |||||||||||| ||| |||||| || | ||  ||| || ||||||||     
T  10209852 aggtcctatctttttatatgcaagctgcatagtttagttt-atgaattgggcgatgtgggactttattagacactcacctgtagtcatatgtttcccctg 10209950  T
Q  140 ttcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaa 239  Q
    ||| |||||| ||||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||| ||| |||||||| ||||||    
T  10209951 ttcactccttcacacatttatttgaaatgtttaatc-ttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaacatctcaaagctagaa 10210049  T
Q  240 cattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
    |||||| |||||  |||||||||||||| ||||||||||||    
T  10210050 cattaaacattcattgaagcttttcttctaaaagaaagaga 10210090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 12104672 - 12104903
Alignment:
Q  37 tagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttccc 136  Q
    |||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| ||| ||||||||| | |||||||||| ||||||    
T  12104672 tagaggtcctatctttttatatgtgagctgcataatttagttt-atgaattggtcgatgtgggactttattagacacccacctgttctcacatgtttccc 12104770  T
Q  137 ctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaacta 236  Q
    |||||  ||| |  |||||  |||||||||| |||||| ||||||||||  |||||||| ||||||||||| ||||||||||| ||||||||||||  ||    
T  12104771 ctatttactcatccacacacctatttgaaatatttaat-cttttctcttcaatttcatgtgtttaaaatca-tttagttttctacaatatctcaaagtta 12104868  T
Q  237 gaacattaaccattccatgaagcttttcttccaaa 271  Q
    ||||||||| ||| |  ||||||||| ||||||||    
T  12104869 gaacattaaacatccactgaagctttccttccaaa 12104903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 111 - 280
Target Start/End: Complemental strand, 10109195 - 10109027
Alignment:
Q  111 cacccaacggttctcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattt 210  Q
    |||||| | |||||||||| |||||||||| | |||||| ||||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||    
T  10109195 cacccacccgttctcacatgtttcccctatccactccttcacacatttatttgaaatgtttaatc-ttttctcttcaatttcatgtgtttaaaatcattt 10109097  T
Q  211 tagttttctgcaatatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
    ||||||||||||| |||||||||||||||||||||  ||||  |||| ||||||||| ||||||||||||    
T  10109096 tagttttctgcaacatctcaaaactagaacattaaatattcattgaaacttttcttctaaaagaaagaga 10109027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 10215984 - 10216160
Alignment:
Q  67 catagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctccttgacacatttatttgaaa 166  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||   |||||||||| |||| ||||||  ||| |  ||||||||||||||||    
T  10215984 catagtttagtttc-tgaattggtcgatgtgggactttatcagacacccacatgttctcacatgtttcacctatttactcatccacacatttatttgaaa 10216082  T
Q  167 tgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaa 245  Q
     ||||||| ||||||||||  |||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||    
T  10216083 ggtttaat-cttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagcattaa 10216160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 10105750 - 10105596
Alignment:
Q  124 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 223  Q
    |||||| |||||||||||| ||| |  ||| ||||||||||||||||||||| |||||||||  |||||||  |||| ||||||| | |||||||| |||    
T  10105750 tcacatctttcccctattcactcatccacatatttatttgaaatgtttaatc-ttttctcttcaatttcatatgttttaaatcatat-agttttcttcaa 10105653  T
Q  224 tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
    ||||||||| |||||||||||| |||||  |||||||||||||||||||||||||||    
T  10105652 tatctcaaagctagaacattaaacattcattgaagcttttcttccaaaagaaagaga 10105596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 321 - 416
Target Start/End: Complemental strand, 10108937 - 10108843
Alignment:
Q  321 atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatc 416  Q
    |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  10108937 atatccttaataaaatactta-cagtattaacaaggcatgaatttacagtaaggagctacagttgtcagtttgcagtaagagacttcggattaatc 10108843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 268
Target Start/End: Original strand, 9660489 - 9660631
Alignment:
Q  124 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 223  Q
    |||||| ||||||| |||| ||| |  |||||||||||||||| |||||||| ||||||||| ||||||||  |||||||||||||| |||||||| |||    
T  9660489 tcacatctttcccccattcactcatccacacatttatttgaaaggtttaatc-ttttctcttcgatttcatatgtttaaaatcattt-agttttcttcaa 9660586  T
Q  224 tatctcaaaactagaacattaaccattccatgaagcttttcttcc 268  Q
    |||||| || |||||||||||| |||||  |||||| || |||||    
T  9660587 tatctctaagctagaacattaaacattcattgaagcattccttcc 9660631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 10212527 - 10212681
Alignment:
Q  124 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 223  Q
    |||||| |||||||||||| ||| |  |||||||||||  ||| | |||||||||| ||||   |||||||| |||||||||||| | |||||||| |||    
T  10212527 tcacatctttcccctattcactcatccacacatttattcaaaaggattaatccttt-ctctccaatttcatgtgtttaaaatcatct-agttttcttcaa 10212624  T
Q  224 tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
     |||||||| |||||| ||||| |||||  |||||||||||||||||||||||||||    
T  10212625 catctcaaagctagaatattaatcattcattgaagcttttcttccaaaagaaagaga 10212681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 12109599 - 12109723
Alignment:
Q  124 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 223  Q
    |||||| |||||||||||| ||| |  || ||||||||||||| |||||||| |||||||||  |||||||  |||||||||||||| |||||||| |||    
T  12109599 tcacatctttcccctattcactcatccacgcatttatttgaaaggtttaatc-ttttctcttcaatttcatatgtttaaaatcattt-agttttcttcaa 12109696  T
Q  224 tatctcaaaactagaacattaaccatt 250  Q
    |||||| || |||||||||||| ||||    
T  12109697 tatctctaagctagaacattaaacatt 12109723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 10210184 - 10210263
Alignment:
Q  321 atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaaga 401  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||    
T  10210184 atatccttaataaaatactta-cagtattaacaagacatgaaattacagtaaggggctacaatgtttagtgtgcaataaga 10210263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 456 - 528
Target Start/End: Original strand, 10211213 - 10211285
Alignment:
Q  456 gagctcaccttccaaccgatgagctgcattgagctaaacgatctatgcggtcttttggtttaagtaagtcttt 528  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| |  ||||||| |||||||||||||||    
T  10211213 gagctcaccttctaacagatgagctgcattgagctaaacgatctattccttcttttgttttaagtaagtcttt 10211285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 459 - 528
Target Start/End: Original strand, 10213394 - 10213463
Alignment:
Q  459 ctcaccttccaaccgatgagctgcattgagctaaacgatctatgcggtcttttggtttaagtaagtcttt 528  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||| ||||| |||||||||    
T  10213394 ctcaccttccaaccgctgagctgtattgagctaaacgatatattcggtcttttgttttaactaagtcttt 10213463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 459 - 535
Target Start/End: Original strand, 9684140 - 9684216
Alignment:
Q  459 ctcaccttccaaccgatgagctgcattgagctaaacgatctatgcggtcttttggtttaagtaagtctttaaaaacc 535  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |  ||||||| ||| ||||| |||||| |||||    
T  9684140 ctcaccttccaaccgatgagctgtattgagctaaacgatctattccatcttttgttttcagtaaatctttacaaacc 9684216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 9674994 - 9675091
Alignment:
Q  151 acacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccatt 250  Q
    ||||||||||||||||||||||||| |||||||||  || ||||  ||||||| |||||| ||||||||   |||||||||| |||||||||||||||||    
T  9674994 acacatttatttgaaatgtttaatc-ttttctcttcaatatcatatgtttaaa-tcattt-agttttctttgatatctcaaagctagaacattaaccatt 9675090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 10109288 - 10109214
Alignment:
Q  38 agaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacac 113  Q
    |||||| || ||||||||||||  | |||||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  10109288 agaggttctatctttttatatgcaagctgcatagtttagttt-atgaattgggcgatgtgggactttatcagacac 10109214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 10212395 - 10212475
Alignment:
Q  32 ggagatagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacac 113  Q
    |||| |||||||| |||| |||||||||||| | ||||||||||| |||||| |||||| ||||||||||  ||||||||||    
T  10212395 ggaggtagaggtcatttcattttatatgtgatcagcatagtttag-tttatgcattggtagatgtgggacattatcagacac 10212475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 10105876 - 10105801
Alignment:
Q  37 tagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacac 113  Q
    ||||| ||||||| |||||||||  | ||||||||||||| |||||||| ||| |||||||||||| | ||||||||    
T  10105876 tagagatcctttcattttatatgaaagctgcatagtttag-tttatgaactgggcgatgtgggactttgtcagacac 10105801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 10102789 - 10102715
Alignment:
Q  39 gaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacc 114  Q
    |||||| |||| ||||||| || | | |||||||||||||| |||||||||||||||||||| | |||| ||||||    
T  10102789 gaggtcttttcgttttataagtaagcagcatagtttagttt-atgaattggtcgatgtgggagtttatccgacacc 10102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 10542252 - 10542173
Alignment:
Q  201 aaaatcattttagttttctgcaa-tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
    ||||||||||||| ||||| ||| |||||||||  ||||| ||||| |||||| ||||||||| ||||| |||||||||||    
T  10542252 aaaatcattttagatttcttcaaatatctcaaagttagaagattaaacattccttgaagctttgcttcc-aaagaaagaga 10542173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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