View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13650_low_1 (Length: 683)
Name: NF13650_low_1
Description: NF13650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13650_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 85 - 666
Target Start/End: Original strand, 10381042 - 10381624
Alignment:
| Q |
85 |
ttagtagatgaaactt-tttattttcttatgtatttgctggttcctttatatttagaagttttccaactagtatgactcggtgcaaatctaaaaattcat |
183 |
Q |
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| T |
10381042 |
ttagtagatgaaatttctttattttcttatgtatttgctagttcctttatatttagaagttttccaaatagtatgactggg-gaaaatctaaaaatgcat |
10381140 |
T |
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| Q |
184 |
atttaatatatattcatggtaatcaactatttaatatgtattcatgatatgcataatctcataagtaaaaaggacgtatataaaatgttattatgaactt |
283 |
Q |
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| T |
10381141 |
attcaatatatattgatggtaatcaactatttaatatgtattcatgatatacgtaatctcatacgtaaaaaggaagtatataaaatgttattatgaactt |
10381240 |
T |
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| Q |
284 |
ctaagaactaaacaatgacaaaattctaaagactagnnnnnnnnnnnnnnnnnnnctatgtttatcaattcaattatgctttcctgtaaaa-aataaaat |
382 |
Q |
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| T |
10381241 |
ctaagaactaaacaatgacaaaattctaaagactaggaaaaaaaaaaaaaaggaactatgtttatcaattcaattatgctttcctgtaaaaaaataaaat |
10381340 |
T |
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| Q |
383 |
tctgatttgaaaatatgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacat |
482 |
Q |
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| T |
10381341 |
tctgatttgaaaatatgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacat |
10381440 |
T |
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| Q |
483 |
tgttgatggaaaacatgcttgcacttggtacgaacaatgtctggtacttctgtttcattgtaaaactccttcaaacaaattgagcattgttccattgaac |
582 |
Q |
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| T |
10381441 |
tgttgatggaaaacatgcatgcacttggtacgaacaatggctggtacttctgtttcattgtaaaactccttcaaacaaattgagcattgttccattgaac |
10381540 |
T |
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| Q |
583 |
aagcggtatctgcattgtcctccactttgatcttctccaacgaattcataacattcgttacatcatgaaccgtaacattcatct |
666 |
Q |
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| T |
10381541 |
aagcggtatctgcattgtcgtccactttgatcttctccaacgaattcataacattcgttacatcatgaaccgtaacactcatct |
10381624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 10380914 - 10380988
Alignment:
| Q |
11 |
cataggtaaatatcttttattttgaggtcaaattgccttgtatgtgatgacttccaaaactcctgcatcctttat |
85 |
Q |
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| T |
10380914 |
cataggtaaatatcttttatcttgaggtcaaattgtcttgtatgtgatgacttccaaaactcctgcatcctttat |
10380988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 398 - 584
Target Start/End: Original strand, 10429054 - 10429240
Alignment:
| Q |
398 |
tgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgttgatggaaaaca |
497 |
Q |
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| T |
10429054 |
tgatcattgaatttgagaacgacacactggacaagaatataaacgattgtgaaagctacattgtttaagccaccgagcaacacaatgttcatgaaaaaaa |
10429153 |
T |
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| Q |
498 |
tgcttgcacttggtacgaacaatgtctggtacttctgtttcattgtaaaactccttcaaacaaattgagcattgttccattgaacaa |
584 |
Q |
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| T |
10429154 |
tgcatacacttggtacgaataatgtgtggtacttctgatccatcacaaaattcctccaaacaaattgaacattgttctcttgaacaa |
10429240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 398 - 522
Target Start/End: Original strand, 10396771 - 10396895
Alignment:
| Q |
398 |
tgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgttgatggaaaaca |
497 |
Q |
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| T |
10396771 |
tgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatgcataatccaattagtaacacaatgctcatggaaaaca |
10396870 |
T |
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| Q |
498 |
tgcttgcacttggtacgaacaatgt |
522 |
Q |
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| T |
10396871 |
tgcatgcacttggtacgaacaatgt |
10396895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 522
Target Start/End: Original strand, 10406991 - 10407115
Alignment:
| Q |
398 |
tgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgttgatggaaaaca |
497 |
Q |
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| T |
10406991 |
tgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaattcataatccaattagtaacacaatgctcatggaaaaca |
10407090 |
T |
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| Q |
498 |
tgcttgcacttggtacgaacaatgt |
522 |
Q |
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| T |
10407091 |
tgcatgcacttggtacgaacaatgt |
10407115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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