View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13650_low_2 (Length: 536)

Name: NF13650_low_2
Description: NF13650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13650_low_2
NF13650_low_2
[»] chr5 (19 HSPs)
chr5 (19-536)||(13855517-13856022)
chr5 (40-280)||(10209852-10210090)
chr5 (37-271)||(12104672-12104903)
chr5 (111-280)||(10109027-10109195)
chr5 (67-245)||(10215984-10216160)
chr5 (124-280)||(10105596-10105750)
chr5 (321-416)||(10108843-10108937)
chr5 (124-268)||(9660489-9660631)
chr5 (124-280)||(10212527-10212681)
chr5 (124-250)||(12109599-12109723)
chr5 (321-401)||(10210184-10210263)
chr5 (456-528)||(10211213-10211285)
chr5 (459-528)||(10213394-10213463)
chr5 (459-535)||(9684140-9684216)
chr5 (151-251)||(9674994-9675091)
chr5 (38-113)||(10109214-10109288)
chr5 (32-113)||(10212395-10212475)
chr5 (37-113)||(10105801-10105876)
chr5 (39-114)||(10102715-10102789)
[»] chr1 (1 HSPs)
chr1 (201-280)||(10542173-10542252)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 13856022 - 13855517
Alignment:
Q  19 ctccatgcttgtaggagatagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaac 118  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |    
T  13856022 ctccgtgcttgtaagaggtagaggtcctttctttttatatgtgaactgcatagtttagttt-atgaattggttgatgtgggactctatcagacacccacc 13855924  T
Q  119 ggttctcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttc 218  Q
      ||||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13855923 tattctcacatatttcccctattc----cttgacacatttatttgaaatgtttaatctttttctctttgatttcatgcgtttaaaatcattttagttttc 13855828  T
Q  219 tgcaatatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagagagacaagagtgagaggatttgatccctattatgtatatg 318  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  13855827 tgcaatatctcaaaactagaacattaaccattcaatgaagcttttcttccaaaagaaagagagacaagagtgagaggatttgatccctattat------- 13855735  T
Q  319 agatatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatcnn 418  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  13855734 atatatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatctt 13855635  T
Q  419 nnnnncccttaagttggtcctttgttgtccaacagatgagctcaccttccaaccgatgagctgcattgagctaaacgatctatgcggtcttttggtttaa 518  Q
         ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||  ||||    
T  13855634 tttttcccttaagttggtcctttgttttccaacagatgagctcaccttccaaccgatgagctgcatcgagctaaacgatttattctgtcttttgtgttaa 13855535  T
Q  519 gtaagtctttaaaaacct 536  Q
    ||||||||||| ||||||    
T  13855534 gtaagtctttacaaacct 13855517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 40 - 280
Target Start/End: Original strand, 10209852 - 10210090
Alignment:
Q  40 aggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttccccta 139  Q
    ||||||| ||||||||||||  | |||||||||||||||| ||||||||| |||||||||||| ||| |||||| || | ||  ||| || ||||||||     
T  10209852 aggtcctatctttttatatgcaagctgcatagtttagttt-atgaattgggcgatgtgggactttattagacactcacctgtagtcatatgtttcccctg 10209950  T
Q  140 ttcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaa 239  Q
    ||| |||||| ||||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||| ||| |||||||| ||||||    
T  10209951 ttcactccttcacacatttatttgaaatgtttaatc-ttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaacatctcaaagctagaa 10210049  T
Q  240 cattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
    |||||| |||||  |||||||||||||| ||||||||||||    
T  10210050 cattaaacattcattgaagcttttcttctaaaagaaagaga 10210090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 12104672 - 12104903
Alignment:
Q  37 tagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttccc 136  Q
    |||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| ||| ||||||||| | |||||||||| ||||||    
T  12104672 tagaggtcctatctttttatatgtgagctgcataatttagttt-atgaattggtcgatgtgggactttattagacacccacctgttctcacatgtttccc 12104770  T
Q  137 ctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaacta 236  Q
    |||||  ||| |  |||||  |||||||||| |||||| ||||||||||  |||||||| ||||||||||| ||||||||||| ||||||||||||  ||    
T  12104771 ctatttactcatccacacacctatttgaaatatttaat-cttttctcttcaatttcatgtgtttaaaatca-tttagttttctacaatatctcaaagtta 12104868  T
Q  237 gaacattaaccattccatgaagcttttcttccaaa 271  Q
    ||||||||| ||| |  ||||||||| ||||||||    
T  12104869 gaacattaaacatccactgaagctttccttccaaa 12104903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 111 - 280
Target Start/End: Complemental strand, 10109195 - 10109027
Alignment:
Q  111 cacccaacggttctcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattt 210  Q
    |||||| | |||||||||| |||||||||| | |||||| ||||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||    
T  10109195 cacccacccgttctcacatgtttcccctatccactccttcacacatttatttgaaatgtttaatc-ttttctcttcaatttcatgtgtttaaaatcattt 10109097  T
Q  211 tagttttctgcaatatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
    ||||||||||||| |||||||||||||||||||||  ||||  |||| ||||||||| ||||||||||||    
T  10109096 tagttttctgcaacatctcaaaactagaacattaaatattcattgaaacttttcttctaaaagaaagaga 10109027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 67 - 245
Target Start/End: Original strand, 10215984 - 10216160
Alignment:
Q  67 catagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctccttgacacatttatttgaaa 166  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||   |||||||||| |||| ||||||  ||| |  ||||||||||||||||    
T  10215984 catagtttagtttc-tgaattggtcgatgtgggactttatcagacacccacatgttctcacatgtttcacctatttactcatccacacatttatttgaaa 10216082  T
Q  167 tgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaa 245  Q
     ||||||| ||||||||||  |||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||    
T  10216083 ggtttaat-cttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagcattaa 10216160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 10105750 - 10105596
Alignment:
Q  124 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 223  Q
    |||||| |||||||||||| ||| |  ||| ||||||||||||||||||||| |||||||||  |||||||  |||| ||||||| | |||||||| |||    
T  10105750 tcacatctttcccctattcactcatccacatatttatttgaaatgtttaatc-ttttctcttcaatttcatatgttttaaatcatat-agttttcttcaa 10105653  T
Q  224 tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
    ||||||||| |||||||||||| |||||  |||||||||||||||||||||||||||    
T  10105652 tatctcaaagctagaacattaaacattcattgaagcttttcttccaaaagaaagaga 10105596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 321 - 416
Target Start/End: Complemental strand, 10108937 - 10108843
Alignment:
Q  321 atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatc 416  Q
    |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  10108937 atatccttaataaaatactta-cagtattaacaaggcatgaatttacagtaaggagctacagttgtcagtttgcagtaagagacttcggattaatc 10108843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 268
Target Start/End: Original strand, 9660489 - 9660631
Alignment:
Q  124 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 223  Q
    |||||| ||||||| |||| ||| |  |||||||||||||||| |||||||| ||||||||| ||||||||  |||||||||||||| |||||||| |||    
T  9660489 tcacatctttcccccattcactcatccacacatttatttgaaaggtttaatc-ttttctcttcgatttcatatgtttaaaatcattt-agttttcttcaa 9660586  T
Q  224 tatctcaaaactagaacattaaccattccatgaagcttttcttcc 268  Q
    |||||| || |||||||||||| |||||  |||||| || |||||    
T  9660587 tatctctaagctagaacattaaacattcattgaagcattccttcc 9660631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 10212527 - 10212681
Alignment:
Q  124 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 223  Q
    |||||| |||||||||||| ||| |  |||||||||||  ||| | |||||||||| ||||   |||||||| |||||||||||| | |||||||| |||    
T  10212527 tcacatctttcccctattcactcatccacacatttattcaaaaggattaatccttt-ctctccaatttcatgtgtttaaaatcatct-agttttcttcaa 10212624  T
Q  224 tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
     |||||||| |||||| ||||| |||||  |||||||||||||||||||||||||||    
T  10212625 catctcaaagctagaatattaatcattcattgaagcttttcttccaaaagaaagaga 10212681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 12109599 - 12109723
Alignment:
Q  124 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 223  Q
    |||||| |||||||||||| ||| |  || ||||||||||||| |||||||| |||||||||  |||||||  |||||||||||||| |||||||| |||    
T  12109599 tcacatctttcccctattcactcatccacgcatttatttgaaaggtttaatc-ttttctcttcaatttcatatgtttaaaatcattt-agttttcttcaa 12109696  T
Q  224 tatctcaaaactagaacattaaccatt 250  Q
    |||||| || |||||||||||| ||||    
T  12109697 tatctctaagctagaacattaaacatt 12109723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 10210184 - 10210263
Alignment:
Q  321 atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaaga 401  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||    
T  10210184 atatccttaataaaatactta-cagtattaacaagacatgaaattacagtaaggggctacaatgtttagtgtgcaataaga 10210263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 456 - 528
Target Start/End: Original strand, 10211213 - 10211285
Alignment:
Q  456 gagctcaccttccaaccgatgagctgcattgagctaaacgatctatgcggtcttttggtttaagtaagtcttt 528  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| |  ||||||| |||||||||||||||    
T  10211213 gagctcaccttctaacagatgagctgcattgagctaaacgatctattccttcttttgttttaagtaagtcttt 10211285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 459 - 528
Target Start/End: Original strand, 10213394 - 10213463
Alignment:
Q  459 ctcaccttccaaccgatgagctgcattgagctaaacgatctatgcggtcttttggtttaagtaagtcttt 528  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||| ||||| |||||||||    
T  10213394 ctcaccttccaaccgctgagctgtattgagctaaacgatatattcggtcttttgttttaactaagtcttt 10213463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 459 - 535
Target Start/End: Original strand, 9684140 - 9684216
Alignment:
Q  459 ctcaccttccaaccgatgagctgcattgagctaaacgatctatgcggtcttttggtttaagtaagtctttaaaaacc 535  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |  ||||||| ||| ||||| |||||| |||||    
T  9684140 ctcaccttccaaccgatgagctgtattgagctaaacgatctattccatcttttgttttcagtaaatctttacaaacc 9684216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 9674994 - 9675091
Alignment:
Q  151 acacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccatt 250  Q
    ||||||||||||||||||||||||| |||||||||  || ||||  ||||||| |||||| ||||||||   |||||||||| |||||||||||||||||    
T  9674994 acacatttatttgaaatgtttaatc-ttttctcttcaatatcatatgtttaaa-tcattt-agttttctttgatatctcaaagctagaacattaaccatt 9675090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 10109288 - 10109214
Alignment:
Q  38 agaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacac 113  Q
    |||||| || ||||||||||||  | |||||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  10109288 agaggttctatctttttatatgcaagctgcatagtttagttt-atgaattgggcgatgtgggactttatcagacac 10109214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 10212395 - 10212475
Alignment:
Q  32 ggagatagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacac 113  Q
    |||| |||||||| |||| |||||||||||| | ||||||||||| |||||| |||||| ||||||||||  ||||||||||    
T  10212395 ggaggtagaggtcatttcattttatatgtgatcagcatagtttag-tttatgcattggtagatgtgggacattatcagacac 10212475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 10105876 - 10105801
Alignment:
Q  37 tagaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacac 113  Q
    ||||| ||||||| |||||||||  | ||||||||||||| |||||||| ||| |||||||||||| | ||||||||    
T  10105876 tagagatcctttcattttatatgaaagctgcatagtttag-tttatgaactgggcgatgtgggactttgtcagacac 10105801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 10102789 - 10102715
Alignment:
Q  39 gaggtcctttctttttatatgtgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacc 114  Q
    |||||| |||| ||||||| || | | |||||||||||||| |||||||||||||||||||| | |||| ||||||    
T  10102789 gaggtcttttcgttttataagtaagcagcatagtttagttt-atgaattggtcgatgtgggagtttatccgacacc 10102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 10542252 - 10542173
Alignment:
Q  201 aaaatcattttagttttctgcaa-tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 280  Q
    ||||||||||||| ||||| ||| |||||||||  ||||| ||||| |||||| ||||||||| ||||| |||||||||||    
T  10542252 aaaatcattttagatttcttcaaatatctcaaagttagaagattaaacattccttgaagctttgcttcc-aaagaaagaga 10542173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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