View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13650_low_7 (Length: 292)

Name: NF13650_low_7
Description: NF13650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13650_low_7
NF13650_low_7
[»] chr6 (12 HSPs)
chr6 (18-282)||(23506911-23507175)
chr6 (23-258)||(23634096-23634331)
chr6 (42-278)||(23583197-23583433)
chr6 (42-278)||(23587081-23587317)
chr6 (18-278)||(23391370-23391630)
chr6 (20-235)||(23266472-23266687)
chr6 (42-231)||(23257939-23258128)
chr6 (18-269)||(23594123-23594374)
chr6 (42-235)||(23247551-23247744)
chr6 (56-219)||(23251977-23252140)
chr6 (77-219)||(23283647-23283789)
chr6 (77-220)||(23289960-23290103)
[»] chr5 (1 HSPs)
chr5 (53-111)||(3996382-3996440)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 23506911 - 23507175
Alignment:
Q  18 agttgagacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23506911 agttgagacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggt 23507010  T
Q  118 ctttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507011 ctttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctc 23507110  T
Q  218 cctccacgcttcttcggggtagtcacagctaaccgcacctccttgttggaaactgacatcctatg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507111 cctccacgcttcttcggggtagtcacagctaaccgcacctccttgttggaaactgacatcctatg 23507175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 23634096 - 23634331
Alignment:
Q  23 agacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggtctttt 122  Q
    |||||||||| || |||| | || |||| |||||| |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| ||||| |    
T  23634096 agacaggcgttgcgacctcttaatgccaatgccgcgacatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttct 23634195  T
Q  123 tgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctccctcc 222  Q
    |||||||||  || |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| || |||||||| |||||||||||| |    
T  23634196 tgttaggctccctcatttcacacacccatttatctaagttcctcctcctcacacccctgtacaccgggtggcgtgtctccttgaacttcttcctccctgc 23634295  T
Q  223 acgcttcttcggggtagtcacagctaaccgcacctc 258  Q
    ||||||||||||||||||   ||||||||| |||||    
T  23634296 acgcttcttcggggtagttgaagctaaccggacctc 23634331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 278
Target Start/End: Original strand, 23583197 - 23583433
Alignment:
Q  42 tcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggtctttttgttaggctgtcttatttc 141  Q
    |||| |||| ||| |||||||| ||||| || | ||||||||| || ||||||||||| |||||||||||||| ||||| ||||||||||  || |||||    
T  23583197 tcaatgccattgcagcaacatcgtgggcacgggttgccatctccgcagttggaaaagtccctagccaaatcttagtcttcttgttaggcttcctcatttc 23583296  T
Q  142 acacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctccctccacgcttcttcggggtagtc 241  Q
    ||| ||||||||||||| ||||||  |||| ||||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||     
T  23583297 acaaacccatttatctaagttcctcttccttacacccctatagaccgggtggcgagtctccttgaacttcttcctccctgcacgcttctttggggtagtt 23583396  T
Q  242 acagctaaccgcacctccttgttggaaactgacatcc 278  Q
     |||||||||||| ||||| |||| ||| ||||||||    
T  23583397 gcagctaaccgcatctcctcgttgcaaattgacatcc 23583433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 278
Target Start/End: Original strand, 23587081 - 23587317
Alignment:
Q  42 tcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggtctttttgttaggctgtcttatttc 141  Q
    |||| |||| ||| |||||||| ||||| || |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||  || |||||    
T  23587081 tcaatgccattgcagcaacatcgtgggcacgggctgccatctcggcagttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttc 23587180  T
Q  142 acacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctccctccacgcttcttcggggtagtc 241  Q
    ||| ||||||||||||| ||||||  ||||||| || ||||| || |||||||||||||||||||| |||||||||||| |||||||||||||||||||     
T  23587181 acaaacccatttatctaagttcctcttcctcactcctctatagactgggtggcgagtttccttgaacttcttcctccctgcacgcttcttcggggtagtt 23587280  T
Q  242 acagctaaccgcacctccttgttggaaactgacatcc 278  Q
     | ||||| |||| ||||| |||| ||| ||||||||    
T  23587281 gccgctaatcgcatctcctcgttgcaaattgacatcc 23587317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 23391370 - 23391630
Alignment:
Q  18 agttgagacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggt 117  Q
    ||||||||||||||| ||  ||  |||| |||| ||| ||||||||||| || || ||||||||||| || ||||||||||| ||||||||||| || ||    
T  23391370 agttgagacaggcgtagcggcccctcaatgccattgcggcaacatcatgtgctcgggctgccatctccgcagttggaaaagtgcctagccaaattttagt 23391469  T
Q  118 ctttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctc 217  Q
    ||| || || || |  || |||||||||||||||||||||| ||| ||  |||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  23391470 cttcttatttggttccctcatttcacacacccatttatctaagtttcttttcctcacacccctatataccgggtggcgagtctccttgaacttcttcctc 23391569  T
Q  218 cctccacgcttcttcggggtagtcacagctaaccgcacctccttgttggaaactgacatcc 278  Q
    ||| |||||||||| || |||||| | ||||||| |||||||| |||||||| ||||||||    
T  23391570 cctgcacgcttctttggagtagtcgctgctaacctcacctcctcgttggaaattgacatcc 23391630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 23266472 - 23266687
Alignment:
Q  20 ttgagacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggtct 119  Q
    ||||||||||||| || |||  |||| ||||  || |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||  | ||||    
T  23266472 ttgagacaggcgtagcgacccctcaatgccatcgcagcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaattctagtct 23266571  T
Q  120 ttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctccc 219  Q
    |  |||| || |  || |||||||| ||||||||||||| ||||||  |||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  23266572 tcgtgttgggttccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtggcgagtttccttgaatatcttcctccc 23266671  T
Q  220 tccacgcttcttcggg 235  Q
    | | | ||||||||||    
T  23266672 tgctctcttcttcggg 23266687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 23257939 - 23258128
Alignment:
Q  42 tcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggtctttttgttaggctgtcttatttc 141  Q
    |||| |||| ||| |||||||| ||||| || |||||||| |||| |||||||||||| || ||||||||| |||||||| |||| || |  || |||||    
T  23257939 tcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccccagccaaatcctggtctttgtgttgggttccctcatttc 23258038  T
Q  142 acacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctccctccacgcttctt 231  Q
    ||||||||||||||||| ||||||  |||||||||| ||||||| |||||||||||||||||||||  ||||||||||| | ||||||||    
T  23258039 acacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttctt 23258128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 23594123 - 23594374
Alignment:
Q  18 agttgagacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggt 117  Q
    |||||||||| ||||  | |||| |||| |||| || ||| ||||||||||| || ||| ||||||| ||  ||||||||||||||||||| ||||| ||    
T  23594123 agttgagacaagcgtaacaacctctcaatgccaatgtcgcgacatcatgggctcgtgcttccatctcagccattggaaaagttcctagccatatcttagt 23594222  T
Q  118 ctttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctc 217  Q
    | | ||||||||||  || |||||||||||||||||| |||  ||||||||||||||||||||||| | |||||||| |||  ||||||| ||||| ||     
T  23594223 catcttgttaggctccctcatttcacacacccatttacctaaattcctactcctcacacccctatagatcgggtggcaagtcaccttgaacttctttctg 23594322  T
Q  218 cctccacgcttcttcggggtagtcacagctaaccgcacctccttgttggaaa 269  Q
    | | |||||||||| |||||| |  ||||||||||||| |||| | ||||||    
T  23594323 catgcacgcttctttggggtacttgcagctaaccgcacatcctcggtggaaa 23594374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 23247551 - 23247744
Alignment:
Q  42 tcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggtctttttgttaggctgtcttatttc 141  Q
    |||| |||| ||| |||||||| ||||| || || |||||||| | ||||||||||||||| ||||||||| |  ||||| |||| ||||  || |||||    
T  23247551 tcaatgccattgcagcaacatcgtgggctcgggcagccatctccggtgttggaaaagttcccagccaaatcctattctttgtgttcggctccctcatttc 23247650  T
Q  142 acacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctccctccacgcttcttcggg 235  Q
    ||| |||||||||| || ||||||  |||||||||| ||||| |||||||||||||||||||| ||| ||||||||||| | ||||||||||||    
T  23247651 acaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagtttccttaaatatcttcctccctgctcgcttcttcggg 23247744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 219
Target Start/End: Original strand, 23251977 - 23252140
Alignment:
Q  56 gcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggtctttttgttaggctgtcttatttcacacacccatttat 155  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |  ||||| |||| ||||  || |||||||| ||||||||||    
T  23251977 gcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttat 23252076  T
Q  156 ctaggttcctactcctcacacccctatacaccgggtggcgagtttccttgaatttcttcctccc 219  Q
     || ||||||  |||||||||| ||||| || ||||| ||||||||||| ||| ||||||||||    
T  23252077 ttaagttcctcttcctcacacctctatagacagggtgacgagtttccttaaatatcttcctccc 23252140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 23283647 - 23283789
Alignment:
Q  77 gccatctcggctgttggaaaagttcctagccaaatcttggtctttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacac 176  Q
    |||||||| || ||||||||||| |||||||||||| | ||||||||||| || |  || |||||||| ||||||||||||| ||||||  |||||||||    
T  23283647 gccatctcagccgttggaaaagtccctagccaaatcctagtctttttgttgggttccctcatttcacaaacccatttatctaagttcctcttcctcacac 23283746  T
Q  177 ccctatacaccgggtggcgagtttccttgaatttcttcctccc 219  Q
    |||||||||||||||||||||| ||||| || |||||||||||    
T  23283747 ccctatacaccgggtggcgagtctccttaaacttcttcctccc 23283789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 23289960 - 23290103
Alignment:
Q  77 gccatctcggctgttggaaaagttcctagccaaatcttggtctttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacac 176  Q
    |||||||||||||||| |||||| |||||||||||| | ||||| || || || |  || |||||||||||||||||||||| ||||||  |||||||||    
T  23289960 gccatctcggctgttgcaaaagtccctagccaaatcctagtcttcttatttggttccctcatttcacacacccatttatctaagttcctcttcctcacac 23290059  T
Q  177 ccctatacaccgggtggcgagtttccttgaatttcttcctccct 220  Q
    | |||||||||||||||||||| ||||| || ||||||||||||    
T  23290060 ctctatacaccgggtggcgagtctccttaaacttcttcctccct 23290103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 3996382 - 3996440
Alignment:
Q  53 gccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaat 111  Q
    |||||||| |||||||| |||||||||||||||| ||||||| |||| |||||||||||    
T  3996382 gccgcaacgtcatgggctcgagctgccatctcgggtgttggataagtgcctagccaaat 3996440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University