View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13651_high_3 (Length: 222)
Name: NF13651_high_3
Description: NF13651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13651_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 28326999 - 28326814
Alignment:
| Q |
18 |
atgaacgaattagaatacgctaaacattattattgtccgctcacttggccactagcctatagaatagaagtgcaactaaaagcaaaagcatagtccttta |
117 |
Q |
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| T |
28326999 |
atgaacgaattagaatacgctaaacattattattgtccgctcacttggccactagcctatagaatagaagtgcaactaaaagcaaaagcatagtccttta |
28326900 |
T |
|
| Q |
118 |
attagcaaactaaaaaagcatgtaatctaaatttcgcaaacaaattcaccctccttatttccatatatcttacagagagcctaatc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28326899 |
attagcaaactaaaaaagcatgtaatctaaatttcgcaaacaaattcaccctccttatttccatatatcttacagagagcctaatc |
28326814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 21158520 - 21158625
Alignment:
| Q |
25 |
aattagaatacgctaaacattattattgtccgctcacttggccactagcctatagaatagaagtgcaactaaaagcaaaagcatagtcctttaattagca |
124 |
Q |
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| T |
21158520 |
aattagaatatactaaacattattattgtccacttacttggaaagtagcttatagaatagaagtgcaactaatagcaaaagcatagtcctttaattagca |
21158619 |
T |
|
| Q |
125 |
aactaa |
130 |
Q |
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||||| |
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| T |
21158620 |
tactaa |
21158625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 28239833 - 28239753
Alignment:
| Q |
79 |
gaatagaagtgcaactaaaagcaaaagcatagtcctttaattagcaaactaaaaaagcatgtaatctaaatttcgcaaacaa |
160 |
Q |
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| T |
28239833 |
gaatagaagtgcaattaaaagcaaaaacaaagtccttaaattagcaaact-agaaagcatgtaatctacattgcacaaacaa |
28239753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 24621179 - 24621219
Alignment:
| Q |
94 |
taaaagcaaaagcatagtcctttaattagcaaactaaaaaa |
134 |
Q |
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| T |
24621179 |
taaaagcaaaagcatggtcctttaattagaaaactaaaaaa |
24621219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 29141277 - 29141312
Alignment:
| Q |
73 |
cctatagaatagaagtgcaactaaaagcaaaagcat |
108 |
Q |
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| T |
29141277 |
cctatataatagaagtgcaactaaaagcaaaagcat |
29141312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 47569791 - 47569740
Alignment:
| Q |
94 |
taaaagcaaaagcatagtcctttaattagcaaactaaaaaagcatgtaatcta |
146 |
Q |
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||||||||||| |||||||||| |||||| ||||| | ||||||||||||||| |
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| T |
47569791 |
taaaagcaaaaacatagtccttaaattagaaaact-agaaagcatgtaatcta |
47569740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 384136 - 384184
Alignment:
| Q |
81 |
atagaagtgcaactaaaagcaaaagcatagtcctttaattagcaaacta |
129 |
Q |
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||||||||||||||||||||| ||||||||| | | |||||| |||||| |
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| T |
384136 |
atagaagtgcaactaaaagcagaagcatagtgcataaattagaaaacta |
384184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 9066902 - 9066866
Alignment:
| Q |
97 |
aagcaaaagcatagtcctttaattagcaaactaaaaa |
133 |
Q |
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||||||||||||||||||| ||||||||||| ||||| |
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| T |
9066902 |
aagcaaaagcatagtccttcaattagcaaaccaaaaa |
9066866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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