View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13651_low_4 (Length: 214)
Name: NF13651_low_4
Description: NF13651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13651_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 42279198 - 42279371
Alignment:
| Q |
18 |
aatgtgagggttaaaatccaattactccagattgctcgaagtggaatttttatccatttaagcaactnnnnnnnnttgacgatgtacaaaaatacaccac |
117 |
Q |
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| T |
42279198 |
aatgtgagggttaaaatccaattacttcagattactcgaagtggaatttttacccatttgagcaactaaaaa---ttgacgatgtacaaaaatacaccac |
42279294 |
T |
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| Q |
118 |
ttataactattaatttgacttcagaagaaagaaaaattaataaaaaaccaaattgtatctagatcgtacataaatat |
194 |
Q |
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| T |
42279295 |
ttataactattaatttgacttcagaagaaagaaaaactaataaaaaaccaaattgtatctagatcgtacataaatat |
42279371 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 28083120 - 28083178
Alignment:
| Q |
105 |
aaaaatacaccacttataactattaatttgacttcagaagaaagaaaaattaataaaaaac |
165 |
Q |
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| T |
28083120 |
aaaaatacatcatttataattattgatttgactt--gaagaaaaaaaaattaataaaaaac |
28083178 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 28640573 - 28640618
Alignment:
| Q |
118 |
ttataactattaatttgacttcagaagaaagaaaaattaataaaaa |
163 |
Q |
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| T |
28640573 |
ttataactattgatttgactttagaagagagaaaaactaataaaaa |
28640618 |
T |
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