View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13652_high_10 (Length: 315)
Name: NF13652_high_10
Description: NF13652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13652_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 12185143 - 12185431
Alignment:
| Q |
13 |
tgaacagcacaagttacaatccaaagcttacatttacattcttttcataagctattgcagagagcttaagaacataagctgagaccaacttatagagatg |
112 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
12185143 |
tgaacagcaccagttacaatccaaagctcacatttacattcttttcataagctattattgagagctgaagaacataagctgaaaccaacttatagagatg |
12185242 |
T |
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| Q |
113 |
acattagctcctaaaaagcctaacaattgcttataatattnnnnnnnnnnnnnccgactagggattgaatcggtgagacatctaagtcatgattcaacta |
212 |
Q |
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|||| ||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
12185243 |
acat-----------aagcctaacaattgcttataacattagaaaaagaaaaaccgactagaaattgaatcgatgagacatctaagtcatgattcaacta |
12185331 |
T |
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| Q |
213 |
gttcaatcagtttaattattgcctgcttgtccttacataagctgcaacagaattttataccatgaggtctccgccaaatccaatatgcaagagttcttca |
312 |
Q |
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|||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12185332 |
gttcaatcggttcaattattgcctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttca |
12185431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 12429571 - 12429859
Alignment:
| Q |
13 |
tgaacagcacaagttacaatccaaagcttacatttacattcttttcataagctattgcagagagcttaagaacataagctgagaccaacttatagagatg |
112 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
12429571 |
tgaacagcaccagttacaatccaaagctcacatttacattcttttcataagctattattgagagctgaagaacataagctgaaaccaacttatagagatg |
12429670 |
T |
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| Q |
113 |
acattagctcctaaaaagcctaacaattgcttataatattnnnnnnnnnnnnnccgactagggattgaatcggtgagacatctaagtcatgattcaacta |
212 |
Q |
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| T |
12429671 |
acat-----------aagcctaacaattgcttataacattagaaaaagaaaaaccgactagaaattgaatcgatgagacatctaagtcatgattcaacta |
12429759 |
T |
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| Q |
213 |
gttcaatcagtttaattattgcctgcttgtccttacataagctgcaacagaattttataccatgaggtctccgccaaatccaatatgcaagagttcttca |
312 |
Q |
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|||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12429760 |
gttcaatcggttcaattattgcctgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttca |
12429859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 12173876 - 12173967
Alignment:
| Q |
221 |
agtttaattattgcctgcttgtccttacataagctgcaacagaattttataccatgaggtctccgccaaatccaatatgcaagagttcttca |
312 |
Q |
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|||| |||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12173876 |
agttcaattattgactgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttca |
12173967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 12418304 - 12418395
Alignment:
| Q |
221 |
agtttaattattgcctgcttgtccttacataagctgcaacagaattttataccatgaggtctccgccaaatccaatatgcaagagttcttca |
312 |
Q |
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|||| |||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12418304 |
agttcaattattgactgcatgtctttacataagctgcaacagaattttataacatgaggtctccgccaaatccaatatgcaagagttcttca |
12418395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 5604600 - 5604558
Alignment:
| Q |
14 |
gaacagcacaagttacaatccaaagcttacatttacattcttt |
56 |
Q |
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| T |
5604600 |
gaacagcacgagttacactccaaagcttacatttacattcttt |
5604558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 5630770 - 5630812
Alignment:
| Q |
14 |
gaacagcacaagttacaatccaaagcttacatttacattcttt |
56 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
5630770 |
gaacagcacgagttacactccaaagcttacatttacattcttt |
5630812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 6307600 - 6307557
Alignment:
| Q |
13 |
tgaacagcacaagttacaatccaaagcttacatttacattcttt |
56 |
Q |
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|||||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
6307600 |
tgaacagcactagttgcaatccaaagcttacatttagattcttt |
6307557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 9862229 - 9862186
Alignment:
| Q |
13 |
tgaacagcacaagttacaatccaaagcttacatttacattcttt |
56 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| ||||||| |
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| T |
9862229 |
tgaacagaactagttacaatccaaagcttacatttagattcttt |
9862186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 13167974 - 13168017
Alignment:
| Q |
13 |
tgaacagcacaagttacaatccaaagcttacatttacattcttt |
56 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||| ||||||| |
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| T |
13167974 |
tgaacaacactagttacaatccaaagcttacatttagattcttt |
13168017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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