View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13652_high_11 (Length: 305)
Name: NF13652_high_11
Description: NF13652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13652_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 31321652 - 31321947
Alignment:
| Q |
1 |
atgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtgagaattggaatttgtatacttc |
100 |
Q |
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| T |
31321652 |
atgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtgagaattggaatttgtatacttc |
31321751 |
T |
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| Q |
101 |
tgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgt |
200 |
Q |
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| T |
31321752 |
tgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgt |
31321851 |
T |
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| Q |
201 |
gatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtagatattctt |
296 |
Q |
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| T |
31321852 |
gatgctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaataggattgtagattttctt |
31321947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 31333905 - 31334200
Alignment:
| Q |
1 |
atgagaacactggcgaaaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtcgccaggtgagaattggaatttgtatacttc |
100 |
Q |
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| T |
31333905 |
atgagaacaccagtgagaaggaaattgaagagtttatagatagtgtttatccaatggaaggagcattgtggccaggtgagaattggaatttgtatacttc |
31334004 |
T |
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| Q |
101 |
tgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgt |
200 |
Q |
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| T |
31334005 |
tgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtttgt |
31334104 |
T |
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| Q |
201 |
gatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtagatattctt |
296 |
Q |
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| T |
31334105 |
gatgctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaataggattgtagattttctt |
31334200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 256
Target Start/End: Original strand, 39110404 - 39110562
Alignment:
| Q |
98 |
ttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtt |
197 |
Q |
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|||||| ||||||||||| |||||||||||||| ||||||| | || ||||| |||||||| ||||| || ||||||||||| ||||||||| ||| |
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| T |
39110404 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
39110503 |
T |
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| Q |
198 |
tgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatc |
256 |
Q |
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| T |
39110504 |
tgtgatggaagtgttttgcctagtgcagttggtgttaaccctatggtaaccattcaatc |
39110562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 33521232 - 33521062
Alignment:
| Q |
83 |
ttggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
182 |
Q |
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||||||| ||||| | |||||||| || |||||||||||||| || ||| | | ||| |||||||| | |||||||||||||| ||| |||||||||| |
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| T |
33521232 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
33521133 |
T |
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| Q |
183 |
gaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattca |
253 |
Q |
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| T |
33521132 |
gaaggactatttgtgtgtgatgcaagtttgtttccaactgccataggtatcaatcccatgataactattca |
33521062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 10926283 - 10926339
Alignment:
| Q |
224 |
tgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaatag |
280 |
Q |
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|||| ||||||||||| | || ||||||||||||||||||||||||||||||||||| |
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| T |
10926283 |
tgttagtgttaatcctctaataactattcaatcaactgcattttgtatttcaaatag |
10926339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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