View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13652_high_12 (Length: 300)
Name: NF13652_high_12
Description: NF13652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13652_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 19897993 - 19898286
Alignment:
| Q |
1 |
gaaaatcatacgacatagttgattttttattttatagagagaaatgtgtatgtggtgtgtctgaagggtagagaatgaaaggaataaaatgagtagaatn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19897993 |
gaaaatcatacgacatagttgattttttattttatagagagaaatgtgtatgtggtgtgtctgaagggtagagaataaaaggaataaaatgagtagaata |
19898092 |
T |
|
| Q |
101 |
nnnnnnnntattacccgcatttataagcacaatattatcactataattgggttttttcatacaat---------tttctcatgttcttttcaatcaaagt |
191 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19898093 |
aaaaaaaatattacccgcatttataagcacaatattatcactgtaattgggttttttcatacaattgtcgcaattttctcatgttcttttcaatcaaagt |
19898192 |
T |
|
| Q |
192 |
ctgggcaaagcatcacacaaaggccattattgcaacatgtaataacattgagtgcatcttcgtaacgtaaacaatcatagtcagaatcacaggt |
285 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19898193 |
ctgggcaaaacatcacacaaaggccattattgcaacatgtaataacattgagtgcttcttcgtaacgtaaacaatcatagtcagaatcacaggt |
19898286 |
T |
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