View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13652_high_3 (Length: 560)
Name: NF13652_high_3
Description: NF13652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13652_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 553
Target Start/End: Complemental strand, 12933984 - 12933822
Alignment:
| Q |
391 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
489 |
Q |
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| T |
12933984 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
12933885 |
T |
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| Q |
490 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagt |
553 |
Q |
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| T |
12933884 |
ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagt |
12933822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 541
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
504 |
ggttgctccatataaatctcctcttccaaatctccatg |
541 |
Q |
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| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 553
Target Start/End: Original strand, 28608621 - 28608783
Alignment:
| Q |
391 |
tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta |
489 |
Q |
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| T |
28608621 |
tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt |
28608720 |
T |
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| Q |
490 |
cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagt |
553 |
Q |
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| T |
28608721 |
ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagt |
28608783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 553
Target Start/End: Complemental strand, 14177231 - 14177092
Alignment:
| Q |
414 |
taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc |
512 |
Q |
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| T |
14177231 |
taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc |
14177133 |
T |
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| Q |
513 |
atataaatctcctcttccaaatctccatgaagaaatgcagt |
553 |
Q |
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| T |
14177132 |
atgtagatctcttcatctaaatctccatgaagaaatgcagt |
14177092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 556
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
| Q |
503 |
tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt |
556 |
Q |
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| T |
20706234 |
tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt |
20706182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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