View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13652_high_8 (Length: 324)
Name: NF13652_high_8
Description: NF13652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13652_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 26153046 - 26152886
Alignment:
| Q |
3 |
aatactcagtaaaacttgaagcaattaggaaaaggtggcgtcaccggag---tagtggcggaaatcgcctagttggccggaataaacgagatctcagtga |
99 |
Q |
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| T |
26153046 |
aatactcagtaaaacttgaagcaattaggaaaaggtggcgtcaccggaggagtagtgccggaaatcgactagttggctggaataatcgagatctcagtga |
26152947 |
T |
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| Q |
100 |
aggaaggagaagagatgctaaacggagatacggcggagaacacaaggtcaccggaagtagt |
160 |
Q |
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| T |
26152946 |
aggaaggagaagagatgctaaatggagatacggtggagaacacaaagtcaccggaagtagt |
26152886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 26152893 - 26152814
Alignment:
| Q |
232 |
gaaggagtgaacgaagctcgccggagcggttgccatttagaataaatttgagcttatcttatcacctagtcatttagaat |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26152893 |
gaagtagtgaacgaagctcgccggagcggttgccatttagaataaatttgagcttatcttatcacctagtcatttagaat |
26152814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Original strand, 7048464 - 7048493
Alignment:
| Q |
229 |
gacgaaggagtgaacgaagctcgccggagc |
258 |
Q |
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| T |
7048464 |
gacgaaggagtgaacgaagctcgccggagc |
7048493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Complemental strand, 49871988 - 49871959
Alignment:
| Q |
277 |
atttgagcttatcttatcacctagtcattt |
306 |
Q |
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| T |
49871988 |
atttgagcttatcttatcacctagtcattt |
49871959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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